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The map label for this gene is recO [H]

Identifier: 116327965

GI number: 116327965

Start: 1476329

End: 1477111

Strand: Direct

Name: recO [H]

Synonym: LBL_1254

Alternate gene names: 116327965

Gene position: 1476329-1477111 (Clockwise)

Preceding gene: 116327964

Following gene: 116327966

Centisome position: 40.85

GC content: 43.42

Gene sequence:

>783_bases
ATGTCTGGAAATTCTCCAGGAGCTTTGAAAAAAATACGCGGAATTGTCTTGGAGTCCAGAACGATTCAAGAAGGAGACGC
GCTCATTCGTCTTCTTCCCGAAATAGGGCAGGTGGAGAATTTTCGCGTTCGTGGAATCCGAAAAAGTAAAACCAGGCCGA
TCGCGTCAGTGGAGCCCGGTTCCCTTTCTGATCTGGATTATTATCATTCCAAAAATAAAGAGACGTATAACGTCAAAGAG
ATTTCGCTTATCAATCGGTTTGACAAGGCTAAGTCGGGATATTTCGCGGCGGTGCTCGTATCGTATCTTGTGGAACTCGT
TTCTTCATTCACTCCGGACGGAGCGGAGCATCCGGGCGAGTTTCGACTTCTTTCCGGGGCGTTGGAGGAATTGGAGAAAA
ACGGACCTTCTGGATTGATTCTTCCCTTTTTTAAATTGCGCCTTCTTGTTTCAGGAGGTTTTCTTTCCAAGGAACTTGTT
TGTCATTCCTGTGGAACGGAGCTGAAAAAGATGGTATCCGTTATTTTACAGACTTCTCCTTTCGAACTTATATGTGGAAA
TTGTCTTCATGGGGATCGGAACGATTTAGGTTTGGCACAGTGGATACAGACGTTTTTGATATTTCGATTTCGGGATTTAA
AGGAGAGAAAAATATCCGTTGAAAACATCTTGGGCCTGGACAGAATTTGCAATGAGATGCTTGAACCTATTCTCAGAAAG
AAGTTGAAATCGGCGCTTACTCTCTACGATGCATTGGGAGAGAATCTTGGAAAATTTTTTTAA

Upstream 100 bases:

>100_bases
AGTTTTACCGCCTTCTGGTTCACGGTTTTTTACATCTCCTCGGTTATGATCATGAACGTGGAGAGGAAGAGGAACGGATC
ATGAAATTAAAGGAGGATGA

Downstream 100 bases:

>100_bases
AACGATACTCTTTATCTTTTATTTTTATGTTCTATTGTTTCTCGTGATTTTGGATATCCGATGGGATCAAAAATCTACTC
CGAAACAAATCCCGACTGTT

Product: recombinational DNA repair protein

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSGNSPGALKKIRGIVLESRTIQEGDALIRLLPEIGQVENFRVRGIRKSKTRPIASVEPGSLSDLDYYHSKNKETYNVKE
ISLINRFDKAKSGYFAAVLVSYLVELVSSFTPDGAEHPGEFRLLSGALEELEKNGPSGLILPFFKLRLLVSGGFLSKELV
CHSCGTELKKMVSVILQTSPFELICGNCLHGDRNDLGLAQWIQTFLIFRFRDLKERKISVENILGLDRICNEMLEPILRK
KLKSALTLYDALGENLGKFF

Sequences:

>Translated_260_residues
MSGNSPGALKKIRGIVLESRTIQEGDALIRLLPEIGQVENFRVRGIRKSKTRPIASVEPGSLSDLDYYHSKNKETYNVKE
ISLINRFDKAKSGYFAAVLVSYLVELVSSFTPDGAEHPGEFRLLSGALEELEKNGPSGLILPFFKLRLLVSGGFLSKELV
CHSCGTELKKMVSVILQTSPFELICGNCLHGDRNDLGLAQWIQTFLIFRFRDLKERKISVENILGLDRICNEMLEPILRK
KLKSALTLYDALGENLGKFF
>Mature_259_residues
SGNSPGALKKIRGIVLESRTIQEGDALIRLLPEIGQVENFRVRGIRKSKTRPIASVEPGSLSDLDYYHSKNKETYNVKEI
SLINRFDKAKSGYFAAVLVSYLVELVSSFTPDGAEHPGEFRLLSGALEELEKNGPSGLILPFFKLRLLVSGGFLSKELVC
HSCGTELKKMVSVILQTSPFELICGNCLHGDRNDLGLAQWIQTFLIFRFRDLKERKISVENILGLDRICNEMLEPILRKK
LKSALTLYDALGENLGKFF

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 29093; Mature: 28962

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNSPGALKKIRGIVLESRTIQEGDALIRLLPEIGQVENFRVRGIRKSKTRPIASVEPG
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHCCCCCCCCCCCC
SLSDLDYYHSKNKETYNVKEISLINRFDKAKSGYFAAVLVSYLVELVSSFTPDGAEHPGE
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
FRLLSGALEELEKNGPSGLILPFFKLRLLVSGGFLSKELVCHSCGTELKKMVSVILQTSP
HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
FELICGNCLHGDRNDLGLAQWIQTFLIFRFRDLKERKISVENILGLDRICNEMLEPILRK
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKSALTLYDALGENLGKFF
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGNSPGALKKIRGIVLESRTIQEGDALIRLLPEIGQVENFRVRGIRKSKTRPIASVEPG
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHCCCCCCCCCCCC
SLSDLDYYHSKNKETYNVKEISLINRFDKAKSGYFAAVLVSYLVELVSSFTPDGAEHPGE
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
FRLLSGALEELEKNGPSGLILPFFKLRLLVSGGFLSKELVCHSCGTELKKMVSVILQTSP
HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
FELICGNCLHGDRNDLGLAQWIQTFLIFRFRDLKERKISVENILGLDRICNEMLEPILRK
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKSALTLYDALGENLGKFF
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA