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The map label for this gene is rplY [H]

Identifier: 116327330

GI number: 116327330

Start: 577279

End: 577917

Strand: Reverse

Name: rplY [H]

Synonym: LBL_0524

Alternate gene names: 116327330

Gene position: 577917-577279 (Counterclockwise)

Preceding gene: 116327331

Following gene: 116327329

Centisome position: 15.99

GC content: 43.82

Gene sequence:

>639_bases
ATGAGCCAGAGCACAATTCACAAAATCGCGGTTAAAAAGAGAACGGAAACCGGTAAAAACGAAAACAACCGTCTTCGTTC
TTCGGGAATGATTCCCGTAAATATCATCGGAGCGGGTGTTGCGACTTCCGGTGCGGTAAACGAGAAAGAACTTGCAAAGA
TGGTTCACTCCGGAATTCGTCAATCCACTTTGATAGAACTCGATGTGGAAGGTCAAGGCCAGCAAAAAGTATTCGTAAAA
GAAATCCAAAGATTTCCGGAAATCGACAGAATCCGTCATGTGGACTTTTATAAAGTTGTCCCCGGTCAAAAGATCGTTAC
CAAAATCGGTATAGAAACCACCGGAGTAGCGAAAGGTTCCAAAACCGGGGGTCAGTTCGAACATATTATTCACGAGATTC
GTGTTAAAACGATCCCCGAAGATCTTCTGGAAAATCTAACGATAGATGTTACCGATCTCGACGTGGGAGATTCGATTAAG
ATCAGTCAGTTAAAAGTTCCTGCAAGTTGGGAAATTTTAATCAACGGAGATCCGATCGTGACTTCCGTAAATAAAACGAA
AGCTCTCCTTGCCGCCGAAAGAGCAGAAGCAAAAGGCGCCGTCCCAGACGACGCAAAAGCTAAAAAAGGTAAGAAGTAA

Upstream 100 bases:

>100_bases
GAAATCATTGTCCGTAGCTCCTTTGTTCGCGAACGCGATCAAAAGGATTCATACAAATCAATCAGTCAGCACTTTATTCG
ATTAAGGTTAGGTAATAAGA

Downstream 100 bases:

>100_bases
TACGAAACTTCCATCAGATCTAATCTGATAAAAACAGATAGGTATTCATGAAGCTGATCGTCGGACTCGGGAATCCAGGG
GACAGATACAATAACAACCG

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSQSTIHKIAVKKRTETGKNENNRLRSSGMIPVNIIGAGVATSGAVNEKELAKMVHSGIRQSTLIELDVEGQGQQKVFVK
EIQRFPEIDRIRHVDFYKVVPGQKIVTKIGIETTGVAKGSKTGGQFEHIIHEIRVKTIPEDLLENLTIDVTDLDVGDSIK
ISQLKVPASWEILINGDPIVTSVNKTKALLAAERAEAKGAVPDDAKAKKGKK

Sequences:

>Translated_212_residues
MSQSTIHKIAVKKRTETGKNENNRLRSSGMIPVNIIGAGVATSGAVNEKELAKMVHSGIRQSTLIELDVEGQGQQKVFVK
EIQRFPEIDRIRHVDFYKVVPGQKIVTKIGIETTGVAKGSKTGGQFEHIIHEIRVKTIPEDLLENLTIDVTDLDVGDSIK
ISQLKVPASWEILINGDPIVTSVNKTKALLAAERAEAKGAVPDDAKAKKGKK
>Mature_211_residues
SQSTIHKIAVKKRTETGKNENNRLRSSGMIPVNIIGAGVATSGAVNEKELAKMVHSGIRQSTLIELDVEGQGQQKVFVKE
IQRFPEIDRIRHVDFYKVVPGQKIVTKIGIETTGVAKGSKTGGQFEHIIHEIRVKTIPEDLLENLTIDVTDLDVGDSIKI
SQLKVPASWEILINGDPIVTSVNKTKALLAAERAEAKGAVPDDAKAKKGKK

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 23092; Mature: 22961

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSTIHKIAVKKRTETGKNENNRLRSSGMIPVNIIGAGVATSGAVNEKELAKMVHSGIR
CCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC
QSTLIELDVEGQGQQKVFVKEIQRFPEIDRIRHVDFYKVVPGQKIVTKIGIETTGVAKGS
CCEEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCCEEEECCCCCEEHEECCCCCCCCCCC
KTGGQFEHIIHEIRVKTIPEDLLENLTIDVTDLDVGDSIKISQLKVPASWEILINGDPIV
CCCHHHHHHHHHHHHHCCCHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEE
TSVNKTKALLAAERAEAKGAVPDDAKAKKGKK
EECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQSTIHKIAVKKRTETGKNENNRLRSSGMIPVNIIGAGVATSGAVNEKELAKMVHSGIR
CCHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC
QSTLIELDVEGQGQQKVFVKEIQRFPEIDRIRHVDFYKVVPGQKIVTKIGIETTGVAKGS
CCEEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCCEEEECCCCCEEHEECCCCCCCCCCC
KTGGQFEHIIHEIRVKTIPEDLLENLTIDVTDLDVGDSIKISQLKVPASWEILINGDPIV
CCCHHHHHHHHHHHHHCCCHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEE
TSVNKTKALLAAERAEAKGAVPDDAKAKKGKK
EECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA