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The map label for this gene is hupR1 [H]

Identifier: 116327257

GI number: 116327257

Start: 504438

End: 504878

Strand: Reverse

Name: hupR1 [H]

Synonym: LBL_0446

Alternate gene names: 116327257

Gene position: 504878-504438 (Counterclockwise)

Preceding gene: 116327293

Following gene: 116327256

Centisome position: 13.97

GC content: 40.59

Gene sequence:

>441_bases
TTGCACGATTTGGACAGAAACGGAGAAGATCTTTTGAAAGATCCAGTAAAAAACAATGCGATTCTTTGTGTTGATGATGA
ACCGATCATTTGTATCGCGTTAAAACAAGAATTAAAGAAACAATTCGGAAACGAGTTTCAATACGAAACCGCAGTCAATG
CAAGCGAAGCGTTGGAAGTTGTGGACGAACTGGCGGAGAATGGGATCAACGTAATTTTGATTCTTTCCGATTGGCGTATG
CCTGGGATCAAAGGTGATGAATTCTTAATTCATATTCATCAAAAATACCCGGATATCCGTTCCATATTGATCACAGGTTA
CATAGACGATGCCGCGGTGGAAAGAGTGAAAAAAGAAGCGGGTACTTATGCTGTTCTACCAAAACCATGGGATCCCAAAC
AGCTAGCGGATGCAGTGAAAGTATGCTGTAATCGAAATTAA

Upstream 100 bases:

>100_bases
GAAATCGGTCCAGAATTGATATCTGCAAAAAGATCATAAAGAAAATAGACGTGAGTTTGAGAGTGTTCCCGGAAGAACGA
AGTTCGCGTGCAATTGAAAT

Downstream 100 bases:

>100_bases
TTCGACATTCCACCATTGAGGTTTTGGGTTAAGGTAGGCTCTTATTTGAAATTTCAATTGCAGACCTTCATGTCTCCAAA
GAACTTGTATCAAAGAAGGA

Product: receiver protein of a two-component response regulator

Products: NADP; 2 glutathione [C]

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MHDLDRNGEDLLKDPVKNNAILCVDDEPIICIALKQELKKQFGNEFQYETAVNASEALEVVDELAENGINVILILSDWRM
PGIKGDEFLIHIHQKYPDIRSILITGYIDDAAVERVKKEAGTYAVLPKPWDPKQLADAVKVCCNRN

Sequences:

>Translated_146_residues
MHDLDRNGEDLLKDPVKNNAILCVDDEPIICIALKQELKKQFGNEFQYETAVNASEALEVVDELAENGINVILILSDWRM
PGIKGDEFLIHIHQKYPDIRSILITGYIDDAAVERVKKEAGTYAVLPKPWDPKQLADAVKVCCNRN
>Mature_146_residues
MHDLDRNGEDLLKDPVKNNAILCVDDEPIICIALKQELKKQFGNEFQYETAVNASEALEVVDELAENGINVILILSDWRM
PGIKGDEFLIHIHQKYPDIRSILITGYIDDAAVERVKKEAGTYAVLPKPWDPKQLADAVKVCCNRN

Specific function: Probable member of the two-component regulatory system involved in the regulation of the [NiFe] hydrogenase activity. HupR1 is probably phosphorylated by the sensory component and then acts in conjunction with sigma-54 as a transcriptional activator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 16474; Mature: 16474

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDLDRNGEDLLKDPVKNNAILCVDDEPIICIALKQELKKQFGNEFQYETAVNASEALEV
CCCCCCCCHHHHHCCCCCCCEEEECCCCEEEEHHHHHHHHHHCCCCCHHHHCCHHHHHHH
VDELAENGINVILILSDWRMPGIKGDEFLIHIHQKYPDIRSILITGYIDDAAVERVKKEA
HHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEHHHCCCHHHEEEECCCCHHHHHHHHHHC
GTYAVLPKPWDPKQLADAVKVCCNRN
CCEEECCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHDLDRNGEDLLKDPVKNNAILCVDDEPIICIALKQELKKQFGNEFQYETAVNASEALEV
CCCCCCCCHHHHHCCCCCCCEEEECCCCEEEEHHHHHHHHHHCCCCCHHHHCCHHHHHHH
VDELAENGINVILILSDWRMPGIKGDEFLIHIHQKYPDIRSILITGYIDDAAVERVKKEA
HHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEHHHCCCHHHEEEECCCCHHHHHHHHHHC
GTYAVLPKPWDPKQLADAVKVCCNRN
CCEEECCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADPH2; oxidized glutathione [C]

Specific reaction: NADPH2 + oxidized glutathione = NADP + 2 glutathione [C]

General reaction: Oxidoreductases; Acting on NADH or NADPH; With a disulfide as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1885559; 8497190; 2007559 [H]