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The map label for this gene is 116326947

Identifier: 116326947

GI number: 116326947

Start: 127865

End: 129487

Strand: Reverse

Name: 116326947

Synonym: LBL_0113

Alternate gene names: NA

Gene position: 129487-127865 (Counterclockwise)

Preceding gene: 116326949

Following gene: 116326946

Centisome position: 3.58

GC content: 33.7

Gene sequence:

>1623_bases
ATGTATAAGAATTCAAACTTTAAAACTTTCATTTTGATATTTGGCATTTCTTTTTCTTCAATTTTTGCACATACCGAACC
TGTAGTATTACTCGATCAAGATACTTCTTCAAAAAATATCAGTTCTCTTATCGAATATCGATATAGAGATCAAAAATTTG
CAGGTTGTTCCCCAAATCATATCGATGGGTTAGAAGACTTAGAATGGCATTCGATTTCAGCCGACGTTCTCAGAGTAAAA
AGAACTTCTTTCGGAAATTGGTTACGCTTCAGCGTTCAAAATTCTGAACCTACAATTCAGAATAGAATTCTTCTACTCGG
CTGGTTGAATGTTCCCGATACTCAACTTTGTTTTTTTGATAAAAACGGAAAATTCGTATCCGTAAAATCGGGTTATTCAA
ATCCTACAACGGATGAAAAGATTCTCACAACTTTACCACATTTTAAGATAGATTTGCAGCCAAACGAAAATAGAATTTTT
TATCTTTTTGTGTTATCAAACGAGGATATCAATTACCGAATTCGGATTATGGGTTTAGAAGAATTCGAACTTCACAAAAG
GCTTAAATTCATTACTTCCTATTCGATCGTCGGAATTATTGGGTTTGCAGTTCTTTATTCTTTTTTCGGTTATTATCGAT
TCAAGAATTCGACTTTCATTTTTTTCCCGTTATACGTATTTTCAGTCATCCTCACTTTCTACTTTCTTCATGGACGCACT
TTTGCGGAAGTTTTCGGCAACACAAACAATCTATTTCGACATAGCTATTTCTTATTTCTCGGAACTTCTTACGTGTTTTT
ATTTTTATATCTGTTCGCGATCGACAAGGCCAATCAGAAGAAAGTTTACCGCTCGGTGTTCTTTTGGATTGCAGGAGCAT
TTGGAATTTTATATTCTTTAATTCCTCTCTTGCAATCTTGGTATGACCATAGAATTCTTCTTTTAGTCGCGACTGTCGGT
CTTTCTTTTTTCTATTTTATTCGAGTTCATTATCAATTCTTCAGTTCCAATTCTTCAATCGGATTACTTTACACAACATC
TTGGGCCATATTTTTGGTTTTGGATACATATAAAACGATTTTCCATTTTGATTTTTATCCGTTTAATTATTTTTCGGTGT
TCGGAGTCGTGCTCTTTTTTCCTTTTCATTCGATTTTAGTAAGTTTTTCATTAAACGAATTTTTTAATCGAAGAAAAAAC
CAAGAAATAGTGGGGAAAGAATTCGCACAGGCTAGAAAATCTATTACAAGTTCTTTAAACGTGAACGAAGTCGTTCAGAA
CATTAAGGATCTTTTGGAAAAGAAGAAAGTTTTTCTTCAAAAATCTTTAAAAGAAGAAAATATAGCTAAAGAACTCGGCT
TAAATCTTCACCAACTTTCAGAAATCGTCAACGTAGAATTTGGAAATAATTTTCCCTCTCTAATCAATCAATACAGGATC
GAAGAAGCCAAAAAACTTCTCTTAGATCATCCAGAAAAAACAACTTCGGAAATCGGGAGCCGCGCTGGGTTCAGCTCCAA
ATCCACGTTTTATATGGAATTTAAAAAGTTCACCGGAACTAATCCGAATGCATACCGTAGAAAAAAACTCAAAAGCGAAG
CTGCTTTCAACAAAAATATTTAG

Upstream 100 bases:

>100_bases
TTTCGTTTCAGCTCGCGAGCCATTCGCCCAAACTTTCTTATATCGAATTCACGTTAATCACGTTCTTGGTCACATACGAT
ACTAAAGGTCGTTGAACGGA

Downstream 100 bases:

>100_bases
AAAATCATAATAGAGTTTTTGAAAAATTAATTCTCTGTCCGTTTCTGCTTCGTTGAAATGGATGTTTGAAGCGGTTTTGT
TAATCCGAATCATGGAATTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Response Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Domain Protein; Helix-TurN-Helix- Domain Containing Protein Arac Type; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; Helix-Turn-Helix AraC Type; Transcriptional Regulator AraC Family Protein; Transcription Regulator; AraC/XylS Family Transcriptional Regulator

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MYKNSNFKTFILIFGISFSSIFAHTEPVVLLDQDTSSKNISSLIEYRYRDQKFAGCSPNHIDGLEDLEWHSISADVLRVK
RTSFGNWLRFSVQNSEPTIQNRILLLGWLNVPDTQLCFFDKNGKFVSVKSGYSNPTTDEKILTTLPHFKIDLQPNENRIF
YLFVLSNEDINYRIRIMGLEEFELHKRLKFITSYSIVGIIGFAVLYSFFGYYRFKNSTFIFFPLYVFSVILTFYFLHGRT
FAEVFGNTNNLFRHSYFLFLGTSYVFLFLYLFAIDKANQKKVYRSVFFWIAGAFGILYSLIPLLQSWYDHRILLLVATVG
LSFFYFIRVHYQFFSSNSSIGLLYTTSWAIFLVLDTYKTIFHFDFYPFNYFSVFGVVLFFPFHSILVSFSLNEFFNRRKN
QEIVGKEFAQARKSITSSLNVNEVVQNIKDLLEKKKVFLQKSLKEENIAKELGLNLHQLSEIVNVEFGNNFPSLINQYRI
EEAKKLLLDHPEKTTSEIGSRAGFSSKSTFYMEFKKFTGTNPNAYRRKKLKSEAAFNKNI

Sequences:

>Translated_540_residues
MYKNSNFKTFILIFGISFSSIFAHTEPVVLLDQDTSSKNISSLIEYRYRDQKFAGCSPNHIDGLEDLEWHSISADVLRVK
RTSFGNWLRFSVQNSEPTIQNRILLLGWLNVPDTQLCFFDKNGKFVSVKSGYSNPTTDEKILTTLPHFKIDLQPNENRIF
YLFVLSNEDINYRIRIMGLEEFELHKRLKFITSYSIVGIIGFAVLYSFFGYYRFKNSTFIFFPLYVFSVILTFYFLHGRT
FAEVFGNTNNLFRHSYFLFLGTSYVFLFLYLFAIDKANQKKVYRSVFFWIAGAFGILYSLIPLLQSWYDHRILLLVATVG
LSFFYFIRVHYQFFSSNSSIGLLYTTSWAIFLVLDTYKTIFHFDFYPFNYFSVFGVVLFFPFHSILVSFSLNEFFNRRKN
QEIVGKEFAQARKSITSSLNVNEVVQNIKDLLEKKKVFLQKSLKEENIAKELGLNLHQLSEIVNVEFGNNFPSLINQYRI
EEAKKLLLDHPEKTTSEIGSRAGFSSKSTFYMEFKKFTGTNPNAYRRKKLKSEAAFNKNI
>Mature_540_residues
MYKNSNFKTFILIFGISFSSIFAHTEPVVLLDQDTSSKNISSLIEYRYRDQKFAGCSPNHIDGLEDLEWHSISADVLRVK
RTSFGNWLRFSVQNSEPTIQNRILLLGWLNVPDTQLCFFDKNGKFVSVKSGYSNPTTDEKILTTLPHFKIDLQPNENRIF
YLFVLSNEDINYRIRIMGLEEFELHKRLKFITSYSIVGIIGFAVLYSFFGYYRFKNSTFIFFPLYVFSVILTFYFLHGRT
FAEVFGNTNNLFRHSYFLFLGTSYVFLFLYLFAIDKANQKKVYRSVFFWIAGAFGILYSLIPLLQSWYDHRILLLVATVG
LSFFYFIRVHYQFFSSNSSIGLLYTTSWAIFLVLDTYKTIFHFDFYPFNYFSVFGVVLFFPFHSILVSFSLNEFFNRRKN
QEIVGKEFAQARKSITSSLNVNEVVQNIKDLLEKKKVFLQKSLKEENIAKELGLNLHQLSEIVNVEFGNNFPSLINQYRI
EEAKKLLLDHPEKTTSEIGSRAGFSSKSTFYMEFKKFTGTNPNAYRRKKLKSEAAFNKNI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63215; Mature: 63215

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKNSNFKTFILIFGISFSSIFAHTEPVVLLDQDTSSKNISSLIEYRYRDQKFAGCSPNH
CCCCCCCEEEEEEEECCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
IDGLEDLEWHSISADVLRVKRTSFGNWLRFSVQNSEPTIQNRILLLGWLNVPDTQLCFFD
CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHCCEEEEEECCCCCCEEEEEC
KNGKFVSVKSGYSNPTTDEKILTTLPHFKIDLQPNENRIFYLFVLSNEDINYRIRIMGLE
CCCCEEEEECCCCCCCCCHHHHHHCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEEECH
EFELHKRLKFITSYSIVGIIGFAVLYSFFGYYRFKNSTFIFFPLYVFSVILTFYFLHGRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEHHHHHHHHHHHHHHHCCH
FAEVFGNTNNLFRHSYFLFLGTSYVFLFLYLFAIDKANQKKVYRSVFFWIAGAFGILYSL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
IPLLQSWYDHRILLLVATVGLSFFYFIRVHYQFFSSNSSIGLLYTTSWAIFLVLDTYKTI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEHHHHHHH
FHFDFYPFNYFSVFGVVLFFPFHSILVSFSLNEFFNRRKNQEIVGKEFAQARKSITSSLN
HEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
VNEVVQNIKDLLEKKKVFLQKSLKEENIAKELGLNLHQLSEIVNVEFGNNFPSLINQYRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCHHHHHHHHH
EEAKKLLLDHPEKTTSEIGSRAGFSSKSTFYMEFKKFTGTNPNAYRRKKLKSEAAFNKNI
HHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYKNSNFKTFILIFGISFSSIFAHTEPVVLLDQDTSSKNISSLIEYRYRDQKFAGCSPNH
CCCCCCCEEEEEEEECCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
IDGLEDLEWHSISADVLRVKRTSFGNWLRFSVQNSEPTIQNRILLLGWLNVPDTQLCFFD
CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHCCEEEEEECCCCCCEEEEEC
KNGKFVSVKSGYSNPTTDEKILTTLPHFKIDLQPNENRIFYLFVLSNEDINYRIRIMGLE
CCCCEEEEECCCCCCCCCHHHHHHCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEEECH
EFELHKRLKFITSYSIVGIIGFAVLYSFFGYYRFKNSTFIFFPLYVFSVILTFYFLHGRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEHHHHHHHHHHHHHHHCCH
FAEVFGNTNNLFRHSYFLFLGTSYVFLFLYLFAIDKANQKKVYRSVFFWIAGAFGILYSL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
IPLLQSWYDHRILLLVATVGLSFFYFIRVHYQFFSSNSSIGLLYTTSWAIFLVLDTYKTI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEHHHHHHH
FHFDFYPFNYFSVFGVVLFFPFHSILVSFSLNEFFNRRKNQEIVGKEFAQARKSITSSLN
HEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
VNEVVQNIKDLLEKKKVFLQKSLKEENIAKELGLNLHQLSEIVNVEFGNNFPSLINQYRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCHHHHHHHHH
EEAKKLLLDHPEKTTSEIGSRAGFSSKSTFYMEFKKFTGTNPNAYRRKKLKSEAAFNKNI
HHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA