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The map label for this gene is rbsR [H]

Identifier: 116249394

GI number: 116249394

Start: 797404

End: 798474

Strand: Reverse

Name: rbsR [H]

Synonym: pRL120732

Alternate gene names: 116249394

Gene position: 798474-797404 (Counterclockwise)

Preceding gene: 116249399

Following gene: 116249393

Centisome position: 91.78

GC content: 64.71

Gene sequence:

>1071_bases
ATGGAAGATTCCGCTCATCCGAAACGTTCAGTTACGGTCGCCGACGTCGCGAAGGCCGCAAAGGTCTCGAAGGCCACGGC
CGCCCGCGTTCTCGGCGGCTACGGCGTGGTCAGCGCCAAGATCACAGATCAGGTCATGGCGGCAGCGGCCGCCCTCGAAT
ATCGCCCGAACGAACTCGCCCGCAGCATGAGCACCGGTAGATCCGGCATCATCGGGGTCGTGGTCGGCGACATCGAGAAC
GCTTTCTTCAGCCTGGCAGTGCGCGGCATCAGCGATGCGGCCCGTCTTGCGGGCTTCAACGTCATCATCGCGAATTCGGG
CGAAGAGCTCGATGCGGAAAGATCGGCCGTCGACCTCCTGATCGGCAAACGCGTCGATGGCCTGATCGTCACGCCGGCCC
GTTGCGACAGTATCGATCATCTCCACCACATCCGCCGCGCCGGCGTGCCGCTCGTCCTGTTCGACCGGGCCATCCCCGAA
CTCGATGTCGACGCCGTAACCGGCGACGACCGGGATGCGGCCATCGCGGCGACCCGGCATCTGATCGGGCAAGGACATCG
CCGCCTCGCCTACGTCTCTGCCATGGATGCCGAGGGCGGTGGGCTCACCGATATCGGGCGGATCTCGAATTCCGCCGTGC
GCGAACGCGTGGAAGGTTTTGTCAGCGTCCTGACCGAGGCGGGTCTGCCGAACCCTCTTCATTATGTCAGGCTCGGCGCC
ACGGACCAGCATCAGACGGACGGCGTGATTAAACGACTGCTCTCGGACAGTGCTGCGCCGACGGCGCTGCTGGCATCGGA
CAGCCTCGTCGGCTTGCGCATCTTCAAGTCGCTGCAATCGCTCGGCCTGTCGATCCCCAAGGACGTGTCGATGATATCGT
TTCTCGACGCCGATTGGACCAGCGTCACCGTTCCGCCGATCACCATCGTCGACCAGCGCGTCTACGAGATGGGCAAGCTC
GCCGGCGAGCGGCTCATCGCCCGTATCGAACGCACCCCTCTTGCCGTCGAACGTCTACGCGTCAGCACGAGCCTCGTCCT
GCGCGGCTCCGTCGCCACGATTGGCCGGTGA

Upstream 100 bases:

>100_bases
TGGACAAGATACCGGTCTCTGATATAAAGAGACCGGTCTCACAACATATTTGATATCCGTCAATTGACCGGTCGTCAACA
ACTCTTGTAGTCCTCGGCCC

Downstream 100 bases:

>100_bases
GGCCTATGGAGTTGGCTATACCCCCATCGCTTTGCGAAGCAGCGAGTAGTACCGCATTGCGATCGGTCACAAATGCCCAT
GGCCGCCGGCTTGATATTAC

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MEDSAHPKRSVTVADVAKAAKVSKATAARVLGGYGVVSAKITDQVMAAAAALEYRPNELARSMSTGRSGIIGVVVGDIEN
AFFSLAVRGISDAARLAGFNVIIANSGEELDAERSAVDLLIGKRVDGLIVTPARCDSIDHLHHIRRAGVPLVLFDRAIPE
LDVDAVTGDDRDAAIAATRHLIGQGHRRLAYVSAMDAEGGGLTDIGRISNSAVRERVEGFVSVLTEAGLPNPLHYVRLGA
TDQHQTDGVIKRLLSDSAAPTALLASDSLVGLRIFKSLQSLGLSIPKDVSMISFLDADWTSVTVPPITIVDQRVYEMGKL
AGERLIARIERTPLAVERLRVSTSLVLRGSVATIGR

Sequences:

>Translated_356_residues
MEDSAHPKRSVTVADVAKAAKVSKATAARVLGGYGVVSAKITDQVMAAAAALEYRPNELARSMSTGRSGIIGVVVGDIEN
AFFSLAVRGISDAARLAGFNVIIANSGEELDAERSAVDLLIGKRVDGLIVTPARCDSIDHLHHIRRAGVPLVLFDRAIPE
LDVDAVTGDDRDAAIAATRHLIGQGHRRLAYVSAMDAEGGGLTDIGRISNSAVRERVEGFVSVLTEAGLPNPLHYVRLGA
TDQHQTDGVIKRLLSDSAAPTALLASDSLVGLRIFKSLQSLGLSIPKDVSMISFLDADWTSVTVPPITIVDQRVYEMGKL
AGERLIARIERTPLAVERLRVSTSLVLRGSVATIGR
>Mature_356_residues
MEDSAHPKRSVTVADVAKAAKVSKATAARVLGGYGVVSAKITDQVMAAAAALEYRPNELARSMSTGRSGIIGVVVGDIEN
AFFSLAVRGISDAARLAGFNVIIANSGEELDAERSAVDLLIGKRVDGLIVTPARCDSIDHLHHIRRAGVPLVLFDRAIPE
LDVDAVTGDDRDAAIAATRHLIGQGHRRLAYVSAMDAEGGGLTDIGRISNSAVRERVEGFVSVLTEAGLPNPLHYVRLGA
TDQHQTDGVIKRLLSDSAAPTALLASDSLVGLRIFKSLQSLGLSIPKDVSMISFLDADWTSVTVPPITIVDQRVYEMGKL
AGERLIARIERTPLAVERLRVSTSLVLRGSVATIGR

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=340, Percent_Identity=29.7058823529412, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1790369, Length=341, Percent_Identity=28.4457478005865, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788474, Length=313, Percent_Identity=32.5878594249201, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787948, Length=347, Percent_Identity=25.0720461095101, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789202, Length=342, Percent_Identity=28.6549707602339, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787906, Length=331, Percent_Identity=27.7945619335347, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789068, Length=309, Percent_Identity=28.4789644012945, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI48994940, Length=354, Percent_Identity=27.683615819209, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787580, Length=349, Percent_Identity=24.9283667621776, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786540, Length=323, Percent_Identity=26.0061919504644, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786268, Length=308, Percent_Identity=24.6753246753247, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790715, Length=324, Percent_Identity=19.1358024691358, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37736; Mature: 37736

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDSAHPKRSVTVADVAKAAKVSKATAARVLGGYGVVSAKITDQVMAAAAALEYRPNELA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCHHHHH
RSMSTGRSGIIGVVVGDIENAFFSLAVRGISDAARLAGFNVIIANSGEELDAERSAVDLL
HHHHCCCCCEEEEEECCHHHHHHHHHHHCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
IGKRVDGLIVTPARCDSIDHLHHIRRAGVPLVLFDRAIPELDVDAVTGDDRDAAIAATRH
HCCCCCCEEECCHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHH
LIGQGHRRLAYVSAMDAEGGGLTDIGRISNSAVRERVEGFVSVLTEAGLPNPLHYVRLGA
HHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
TDQHQTDGVIKRLLSDSAAPTALLASDSLVGLRIFKSLQSLGLSIPKDVSMISFLDADWT
CCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
SVTVPPITIVDQRVYEMGKLAGERLIARIERTPLAVERLRVSTSLVLRGSVATIGR
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCHHHCCC
>Mature Secondary Structure
MEDSAHPKRSVTVADVAKAAKVSKATAARVLGGYGVVSAKITDQVMAAAAALEYRPNELA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCHHHHH
RSMSTGRSGIIGVVVGDIENAFFSLAVRGISDAARLAGFNVIIANSGEELDAERSAVDLL
HHHHCCCCCEEEEEECCHHHHHHHHHHHCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
IGKRVDGLIVTPARCDSIDHLHHIRRAGVPLVLFDRAIPELDVDAVTGDDRDAAIAATRH
HCCCCCCEEECCHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHH
LIGQGHRRLAYVSAMDAEGGGLTDIGRISNSAVRERVEGFVSVLTEAGLPNPLHYVRLGA
HHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
TDQHQTDGVIKRLLSDSAAPTALLASDSLVGLRIFKSLQSLGLSIPKDVSMISFLDADWT
CCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
SVTVPPITIVDQRVYEMGKLAGERLIARIERTPLAVERLRVSTSLVLRGSVATIGR
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]