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The map label for this gene is ycjN [C]

Identifier: 116249258

GI number: 116249258

Start: 644357

End: 645667

Strand: Reverse

Name: ycjN [C]

Synonym: pRL120593

Alternate gene names: 116249258

Gene position: 645667-644357 (Counterclockwise)

Preceding gene: 116249259

Following gene: 116249257

Centisome position: 74.21

GC content: 57.74

Gene sequence:

>1311_bases
ATGCGCAAAACTATGACCGGTCTGTTGGCCGGTGTCGGATTGATGTGGGCCTGCGGAACATCCGCACAGGCCCAGGAACT
GACCATCTTCTGGGCCGAGTGGGACCCGGCAAACTACCTTCAGGAACTCGCCAACGAATACGAGGCTCAAACCGGCGTCA
AGGTCACGGTCGAGACCACACCATGGGCCGACTTCCAGACCAAGGCCTTCACCGAGTTCAACGCCAAGGGTTCAGCCTAT
GACATGGTCGTCGGCGACAGCCAGTGGATCGGGGCAGCGTCAGAAGCCGGCCATTACGTCGATCTGACCGACTTCTTCAC
CAAGCACAATCTGACCCAGGTGATGGCCCCGGCAACAGTGAAATACTACGCCGAATATCCGTCGAACTCGAAAAAATACT
GGTCAATTCCGGCCGAAGGCGACGCCGTCGGCTGGTCCTACCGCAAAGACTGGTTCGAAGATCCCAAGGAGATGGAGGCG
TTCAAGGCCAAATACGGCTACGACCTCGCCCCGCCGAAGACATGGGCAGAGATGCGTGACATCGCCGAGTTCTTCCACCG
TCCAGACCAGAAGCGATACGGAATCGCCATCTACACCGACAACTCTTATGACGGCCTCGTCATGGGTGTCGAGAACGCGA
TCTTCTCGTTTGGGGGCGAACTCGGCGACTACCAGAGCTACAAGGTCGACGGCATCATCAATTCCGAGAAGAACGTCAAG
GCGCTCGAGCTTTATCGCGAGCTCTACGGCTTTACACCTCCGGGCTGGGCCAAGTCCTTCTTCGTCGAGAACAACCAGGC
GATCACCGAGAACCTGGCGGCGATGAGCATGAACTACTTCGCCTTCTTCCCGGCCCTGGTGAACGAGGCATCCAACCCGA
ACGCCAAGGTTACCGGCTTCTTTGCCAATCCGGCAGGCCCGAACGGCGAGCAATTCGCAGCGCTCGGCGGCCAAGGCATA
TCGGTCATCTCATACTCAAAAAACCAGGAAGAGGCGATGAAATTCCTCGAATGGTTCATCAAGGACGAGACCCAGAAGCG
GTGGGCCGAACTCGGCGGCTACACGGCAAGCGCCAAGGTGCTTGAATCGCCGGAGTTTCAGAACGCGACACCCTATAACA
AGGCCTTCTACGAGACGATGTTCAAGGTGAAGGACTTCTGGGCAACGCCTGAATATGCCGAACTGCTGATCCAGATGAAC
CAGCGCATTTATCCCTTCGTCACCGCCGGCCAAGGCACGGCGAAGGAAGCGCTCGAATCCCTGGCAGCGGACTGGAACGC
GACGTTCGCGAAATACGGACGCCACAAGTAG

Upstream 100 bases:

>100_bases
CGAGGAGGACCCCAGCACGAACACCACCCAGGAGGATCGGGAAGCCAGATCGGGAGGCCCGCGATGAAGCGGGAAGCGTG
CATAAATGGGAGGAAACGTT

Downstream 100 bases:

>100_bases
CAAGCGCGCTCAGTGGAGGGGCCGCGGCCCCTCCCATTTCATTCTGCATCTCCGCGCCGAAGGCGCGGCTCGAGAGGGCG
CGGCGCCCGGCATCAACTTC

Product: putative substrate-binding component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRKTMTGLLAGVGLMWACGTSAQAQELTIFWAEWDPANYLQELANEYEAQTGVKVTVETTPWADFQTKAFTEFNAKGSAY
DMVVGDSQWIGAASEAGHYVDLTDFFTKHNLTQVMAPATVKYYAEYPSNSKKYWSIPAEGDAVGWSYRKDWFEDPKEMEA
FKAKYGYDLAPPKTWAEMRDIAEFFHRPDQKRYGIAIYTDNSYDGLVMGVENAIFSFGGELGDYQSYKVDGIINSEKNVK
ALELYRELYGFTPPGWAKSFFVENNQAITENLAAMSMNYFAFFPALVNEASNPNAKVTGFFANPAGPNGEQFAALGGQGI
SVISYSKNQEEAMKFLEWFIKDETQKRWAELGGYTASAKVLESPEFQNATPYNKAFYETMFKVKDFWATPEYAELLIQMN
QRIYPFVTAGQGTAKEALESLAADWNATFAKYGRHK

Sequences:

>Translated_436_residues
MRKTMTGLLAGVGLMWACGTSAQAQELTIFWAEWDPANYLQELANEYEAQTGVKVTVETTPWADFQTKAFTEFNAKGSAY
DMVVGDSQWIGAASEAGHYVDLTDFFTKHNLTQVMAPATVKYYAEYPSNSKKYWSIPAEGDAVGWSYRKDWFEDPKEMEA
FKAKYGYDLAPPKTWAEMRDIAEFFHRPDQKRYGIAIYTDNSYDGLVMGVENAIFSFGGELGDYQSYKVDGIINSEKNVK
ALELYRELYGFTPPGWAKSFFVENNQAITENLAAMSMNYFAFFPALVNEASNPNAKVTGFFANPAGPNGEQFAALGGQGI
SVISYSKNQEEAMKFLEWFIKDETQKRWAELGGYTASAKVLESPEFQNATPYNKAFYETMFKVKDFWATPEYAELLIQMN
QRIYPFVTAGQGTAKEALESLAADWNATFAKYGRHK
>Mature_436_residues
MRKTMTGLLAGVGLMWACGTSAQAQELTIFWAEWDPANYLQELANEYEAQTGVKVTVETTPWADFQTKAFTEFNAKGSAY
DMVVGDSQWIGAASEAGHYVDLTDFFTKHNLTQVMAPATVKYYAEYPSNSKKYWSIPAEGDAVGWSYRKDWFEDPKEMEA
FKAKYGYDLAPPKTWAEMRDIAEFFHRPDQKRYGIAIYTDNSYDGLVMGVENAIFSFGGELGDYQSYKVDGIINSEKNVK
ALELYRELYGFTPPGWAKSFFVENNQAITENLAAMSMNYFAFFPALVNEASNPNAKVTGFFANPAGPNGEQFAALGGQGI
SVISYSKNQEEAMKFLEWFIKDETQKRWAELGGYTASAKVLESPEFQNATPYNKAFYETMFKVKDFWATPEYAELLIQMN
QRIYPFVTAGQGTAKEALESLAADWNATFAKYGRHK

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49143; Mature: 49143

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTMTGLLAGVGLMWACGTSAQAQELTIFWAEWDPANYLQELANEYEAQTGVKVTVETT
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
PWADFQTKAFTEFNAKGSAYDMVVGDSQWIGAASEAGHYVDLTDFFTKHNLTQVMAPATV
CCCCCCHHHHHEECCCCCEEEEEECCCHHCCCCCCCCCEEEHHHHHHHCCHHHHHCCHHE
KYYAEYPSNSKKYWSIPAEGDAVGWSYRKDWFEDPKEMEAFKAKYGYDLAPPKTWAEMRD
EEEEECCCCCCEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHH
IAEFFHRPDQKRYGIAIYTDNSYDGLVMGVENAIFSFGGELGDYQSYKVDGIINSEKNVK
HHHHHHCCCCCCEEEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCHH
ALELYRELYGFTPPGWAKSFFVENNQAITENLAAMSMNYFAFFPALVNEASNPNAKVTGF
HHHHHHHHHCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
FANPAGPNGEQFAALGGQGISVISYSKNQEEAMKFLEWFIKDETQKRWAELGGYTASAKV
ECCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHH
LESPEFQNATPYNKAFYETMFKVKDFWATPEYAELLIQMNQRIYPFVTAGQGTAKEALES
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
LAADWNATFAKYGRHK
HHHCCCHHHHHHCCCC
>Mature Secondary Structure
MRKTMTGLLAGVGLMWACGTSAQAQELTIFWAEWDPANYLQELANEYEAQTGVKVTVETT
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
PWADFQTKAFTEFNAKGSAYDMVVGDSQWIGAASEAGHYVDLTDFFTKHNLTQVMAPATV
CCCCCCHHHHHEECCCCCEEEEEECCCHHCCCCCCCCCEEEHHHHHHHCCHHHHHCCHHE
KYYAEYPSNSKKYWSIPAEGDAVGWSYRKDWFEDPKEMEAFKAKYGYDLAPPKTWAEMRD
EEEEECCCCCCEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHH
IAEFFHRPDQKRYGIAIYTDNSYDGLVMGVENAIFSFGGELGDYQSYKVDGIINSEKNVK
HHHHHHCCCCCCEEEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCHH
ALELYRELYGFTPPGWAKSFFVENNQAITENLAAMSMNYFAFFPALVNEASNPNAKVTGF
HHHHHHHHHCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
FANPAGPNGEQFAALGGQGISVISYSKNQEEAMKFLEWFIKDETQKRWAELGGYTASAKV
ECCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHH
LESPEFQNATPYNKAFYETMFKVKDFWATPEYAELLIQMNQRIYPFVTAGQGTAKEALES
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
LAADWNATFAKYGRHK
HHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]