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The map label for this gene is ycjO [C]

Identifier: 116249257

GI number: 116249257

Start: 643294

End: 644199

Strand: Reverse

Name: ycjO [C]

Synonym: pRL120592

Alternate gene names: 116249257

Gene position: 644199-643294 (Counterclockwise)

Preceding gene: 116249258

Following gene: 116249256

Centisome position: 74.04

GC content: 58.61

Gene sequence:

>906_bases
TTGGCCACCGCAGTCATGACATCGCTGGACACGAAATCGCGTGCCGCATCTCGCGGCATGAGCGACATCCGGATACGCAA
TCTCTTCATCATTCCGACGATCCTGTTCCTGATCGTCTTCAACATCTTTCCGCTGATCTATTCGCTCGGCTATTCCTTCA
CCGACTTTCGCGCTTCGTCGAACGCGCCGGCCAACTTCGTCGGTCTGCAGAACTACCGCGAGTTGCTGAACGATCCTTTC
ATCTGGTCGAATTTCGCCATTACCGCGAAATATGTGATCGTCTCTGTGACGGGGCAGGTGATCGTCGGCTTCGGCACCGC
GATGCTGCTCAACCGCGATATCCCGCTGAAGGGTCTTCTGACGACGCTGCTGCTGCTGCCGATGATGCTCTCGATGGCCG
TGGTCGGCCTCTTCTGGAAGCTGCTCTACGACCCGTCCTTCGGCATCATCAACTACGCACTCGGCCTCGGCTCCTTCGAG
TGGCTGTCGAATCCGGACATGGCGCTCTATGCGGTCGCAATCACGGACATCTGGATGTGGTCGCCCTTCGTGATGCTGCT
GTCGCTTGCCGGCCTTTCGGCCGTGCCGAAGCATCTCTACGAGGCAGCGGCGATCGACCGGGCGGGGCCGTTCTATACCT
TCTTCCGCATCACGCTGCCGCTGGTGGCGCCGATCCTGATGATCGCAATCATCTTCCGTACGATGGAGGCCTTCAAGACC
TTCGACCTCGCCTACATCCTGACCAGCCAACCGACGACCGAGGTGATCTCCATCCGGCTCTACAAGATGGCCTTCCAGGA
ATGGCAGACGGGGCGCTCCTGCGCACTCGCCTACATCGTGCTCGTCATGGTTCTCGCCATCACCAACATCTACGTGAAGT
ACCTCAACAAAGTGAAGGAGCGCTGA

Upstream 100 bases:

>100_bases
CGAAGGCGCGGCTCGAGAGGGCGCGGCGCCCGGCATCAACTTCGCGCATCGTGATGCCATTCCGGCATCCGGCGCGCCGA
ACTCTCGGAGGAGGAGAGGA

Downstream 100 bases:

>100_bases
GATGGCTGCCGTCCAAACCCGCTCCGAACGCGCGCTGAACCGGGTGGCGATCGCCGCCGTACTGGTCATCACGCTGATCT
TCCTGGCGCCGATCTACTGG

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MATAVMTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPANFVGLQNYRELLNDPF
IWSNFAITAKYVIVSVTGQVIVGFGTAMLLNRDIPLKGLLTTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGLGSFE
WLSNPDMALYAVAITDIWMWSPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKT
FDLAYILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLVMVLAITNIYVKYLNKVKER

Sequences:

>Translated_301_residues
MATAVMTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPANFVGLQNYRELLNDPF
IWSNFAITAKYVIVSVTGQVIVGFGTAMLLNRDIPLKGLLTTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGLGSFE
WLSNPDMALYAVAITDIWMWSPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKT
FDLAYILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLVMVLAITNIYVKYLNKVKER
>Mature_300_residues
ATAVMTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPANFVGLQNYRELLNDPFI
WSNFAITAKYVIVSVTGQVIVGFGTAMLLNRDIPLKGLLTTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGLGSFEW
LSNPDMALYAVAITDIWMWSPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKTF
DLAYILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLVMVLAITNIYVKYLNKVKER

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=261, Percent_Identity=28.3524904214559, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789861, Length=282, Percent_Identity=27.6595744680851, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790465, Length=255, Percent_Identity=30.5882352941176, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33852; Mature: 33721

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAVMTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASS
CCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
NAPANFVGLQNYRELLNDPFIWSNFAITAKYVIVSVTGQVIVGFGTAMLLNRDIPLKGLL
CCCCHHHHHHHHHHHHCCCCEECCHHHHHEEEEEEECCHHHHHHHHHHHHCCCCCHHHHH
TTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGLGSFEWLSNPDMALYAVAITDIWMW
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHH
SPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKT
HHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDLAYILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLVMVLAITNIYVKYLNKVKE
HHHEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
R
C
>Mature Secondary Structure 
ATAVMTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASS
CCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
NAPANFVGLQNYRELLNDPFIWSNFAITAKYVIVSVTGQVIVGFGTAMLLNRDIPLKGLL
CCCCHHHHHHHHHHHHCCCCEECCHHHHHEEEEEEECCHHHHHHHHHHHHCCCCCHHHHH
TTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGLGSFEWLSNPDMALYAVAITDIWMW
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHH
SPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKT
HHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDLAYILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLVMVLAITNIYVKYLNKVKE
HHHEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]