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The map label for this gene is ycjP [C]

Identifier: 116249256

GI number: 116249256

Start: 642333

End: 643292

Strand: Reverse

Name: ycjP [C]

Synonym: pRL120591

Alternate gene names: 116249256

Gene position: 643292-642333 (Counterclockwise)

Preceding gene: 116249257

Following gene: 116249255

Centisome position: 73.94

GC content: 62.4

Gene sequence:

>960_bases
ATGGCTGCCGTCCAAACCCGCTCCGAACGCGCGCTGAACCGGGTGGCGATCGCCGCCGTACTGGTCATCACGCTGATCTT
CCTGGCGCCGATCTACTGGATCACCTCGACGGCCTTCAAGCCGCGCAACCTCGCCACCACCATTCCGCCGACGGTGCTCT
TCGAGCCGGAACTCTCGCCCTTCGTGAAGCTCTTCACCAAGCGCTCGCAACTGCGCGGGGCGCCTACTCCTGAAGAATAT
GCCGCCGCGCCCTGGTGGGAGCGGATGGTGTTCGACGGCGGCGAGAAGATCGTTCGCTCCGGCCGCGGCGAGGTGCAGCC
CTCCGGCTATCCGAACCGCTTCATGAACTCGCTGATCGTCGCCATCACGTCCACGGTGCTGGCTGTCGGCATGGGGACCT
TCACAGCCTATGGCTTCTCGCGCTTCAAAGTGAAGGGGGAGGCGGACCTTCTCTTCTTCATCCTGTCGACGCGCATGCTG
CCGCCCGTCGTCGTGGCGATCCCGATGTTCCTCATGTACCGTGTCGTCGGTCTCAACGACACGCATTGGGGCCTCATCAT
CCTCTACACGGCCTTCAACCTTTCCTTCTCCGTCTGGCTGATGAAGGGCTTTATCGACGAGATCCCGAAGGAATACGAGG
AGGCCGCGCTCGTCGACGGCTACACGCGGATGGAGGCATTTTTCAAGATCGTCATTCCGGAAGCGGCGACCGGCATCGCC
GCGACCGCGGTTTTCTGCTTCATCACGGCCTGGAACGAATATGCATTTGCGCTGATCATGACGAACCGGCGCGCGCAAAC
CGCTCCCCCCTTCATTCCGAGCCAGGTCGGCTCAGGCCTGCCGGATTGGACGGTCATTGCCGCCGGCACGTTCCTGTTCC
TGCTACCGGTCGCCATCTTCACCTTCCTGCTCAGGAACCATCTCCTGCGCGGCATGAGCTTCGGAGCGATCCGCAAATGA

Upstream 100 bases:

>100_bases
ACGGGGCGCTCCTGCGCACTCGCCTACATCGTGCTCGTCATGGTTCTCGCCATCACCAACATCTACGTGAAGTACCTCAA
CAAAGTGAAGGAGCGCTGAG

Downstream 100 bases:

>100_bases
CCTTCCGCGCCTTAAACCAGAAATATCTCGAACCCGCTTCGCAGTATCTGATGATCCTCGGCATCATCGCGCTCTGCCAG
CCCTGGAACCTGTTTTTGCA

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MAAVQTRSERALNRVAIAAVLVITLIFLAPIYWITSTAFKPRNLATTIPPTVLFEPELSPFVKLFTKRSQLRGAPTPEEY
AAAPWWERMVFDGGEKIVRSGRGEVQPSGYPNRFMNSLIVAITSTVLAVGMGTFTAYGFSRFKVKGEADLLFFILSTRML
PPVVVAIPMFLMYRVVGLNDTHWGLIILYTAFNLSFSVWLMKGFIDEIPKEYEEAALVDGYTRMEAFFKIVIPEAATGIA
ATAVFCFITAWNEYAFALIMTNRRAQTAPPFIPSQVGSGLPDWTVIAAGTFLFLLPVAIFTFLLRNHLLRGMSFGAIRK

Sequences:

>Translated_319_residues
MAAVQTRSERALNRVAIAAVLVITLIFLAPIYWITSTAFKPRNLATTIPPTVLFEPELSPFVKLFTKRSQLRGAPTPEEY
AAAPWWERMVFDGGEKIVRSGRGEVQPSGYPNRFMNSLIVAITSTVLAVGMGTFTAYGFSRFKVKGEADLLFFILSTRML
PPVVVAIPMFLMYRVVGLNDTHWGLIILYTAFNLSFSVWLMKGFIDEIPKEYEEAALVDGYTRMEAFFKIVIPEAATGIA
ATAVFCFITAWNEYAFALIMTNRRAQTAPPFIPSQVGSGLPDWTVIAAGTFLFLLPVAIFTFLLRNHLLRGMSFGAIRK
>Mature_318_residues
AAVQTRSERALNRVAIAAVLVITLIFLAPIYWITSTAFKPRNLATTIPPTVLFEPELSPFVKLFTKRSQLRGAPTPEEYA
AAPWWERMVFDGGEKIVRSGRGEVQPSGYPNRFMNSLIVAITSTVLAVGMGTFTAYGFSRFKVKGEADLLFFILSTRMLP
PVVVAIPMFLMYRVVGLNDTHWGLIILYTAFNLSFSVWLMKGFIDEIPKEYEEAALVDGYTRMEAFFKIVIPEAATGIAA
TAVFCFITAWNEYAFALIMTNRRAQTAPPFIPSQVGSGLPDWTVIAAGTFLFLLPVAIFTFLLRNHLLRGMSFGAIRK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=190, Percent_Identity=30.5263157894737, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790464, Length=256, Percent_Identity=26.953125, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789860, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35533; Mature: 35402

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVQTRSERALNRVAIAAVLVITLIFLAPIYWITSTAFKPRNLATTIPPTVLFEPELSP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHH
FVKLFTKRSQLRGAPTPEEYAAAPWWERMVFDGGEKIVRSGRGEVQPSGYPNRFMNSLIV
HHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHH
AITSTVLAVGMGTFTAYGFSRFKVKGEADLLFFILSTRMLPPVVVAIPMFLMYRVVGLND
HHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
THWGLIILYTAFNLSFSVWLMKGFIDEIPKEYEEAALVDGYTRMEAFFKIVIPEAATGIA
CCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ATAVFCFITAWNEYAFALIMTNRRAQTAPPFIPSQVGSGLPDWTVIAAGTFLFLLPVAIF
HHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
TFLLRNHLLRGMSFGAIRK
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AAVQTRSERALNRVAIAAVLVITLIFLAPIYWITSTAFKPRNLATTIPPTVLFEPELSP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHH
FVKLFTKRSQLRGAPTPEEYAAAPWWERMVFDGGEKIVRSGRGEVQPSGYPNRFMNSLIV
HHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHH
AITSTVLAVGMGTFTAYGFSRFKVKGEADLLFFILSTRMLPPVVVAIPMFLMYRVVGLND
HHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
THWGLIILYTAFNLSFSVWLMKGFIDEIPKEYEEAALVDGYTRMEAFFKIVIPEAATGIA
CCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ATAVFCFITAWNEYAFALIMTNRRAQTAPPFIPSQVGSGLPDWTVIAAGTFLFLLPVAIF
HHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
TFLLRNHLLRGMSFGAIRK
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]