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The map label for this gene is ycjR [C]

Identifier: 116249250

GI number: 116249250

Start: 636064

End: 636951

Strand: Direct

Name: ycjR [C]

Synonym: pRL120585

Alternate gene names: 116249250

Gene position: 636064-636951 (Clockwise)

Preceding gene: 116249248

Following gene: 116249251

Centisome position: 73.11

GC content: 60.92

Gene sequence:

>888_bases
ATGCATCTTTCGACACATAACTGGATGCGGGCCGAACCGCTCGCCGTCACGCTGAAGCGCATCAAGAAATATGGCTACGA
AAGCATCGAGATATCCGGCGAGCCGGCGCAGTACGACGTCCACGAGACGCGCGCGCTGCTGAAGGAGCATGGCATCCGCT
GCTGGGGCGCCGTTACGCTGACGCTCGGCGAGCGCAATCTTGCCGCCAGGGATGAAGGCCAGCGCGCCAGGTCAGTGGAC
TATGTCAAGAGCGTCATCACCATGGTCAGCGAACTCGATGGCGAGATCGTCACCCTGGTGCCGGCGACCGTCGGAAAGGT
GGTGCCGGATGGCACCGAGGAGGAAGAGTGGACATGGGTGGTGGACGCTACCAAGGAGTGTTTTGCCCATGCCCAGAAGA
GGGGCGTGCGCATTGCCGTCGAGCCGCTCAACCGCTTCGAGACCTATTTCTTCAACCGTGCCGCCCAAGCGCTGGCGCTC
GCCGATGCCGTCAGCCCCGAATGCGGGGTTTGCCTTGATGCCTTCCACCTGAACATCGAGGAGGAAGACATGTATGAAGC
GATCCGGCTCGCTGGAAAGCGCCTGTTCGATTTCCACGTCGCCGATAACAATCGGTTTGCCGCCGGCCTCGGCCAGCTCG
ACTGGCCGAAGATCATCGGCACGCTGAAGGAGATCGGGTACGACGGCGCCGTCACCAACGAATTCGTCGCTCCGGTCGAC
CGCACGCCGGCTTCAAAATATCCGGACATGGTCGAGCGCAACCCCGTCGACATTCCCCCGGAGCAGCTGAAATTTATCCA
AGACCACGGCTCGAGCCTTCTCACTGAGAAGTTCTACGACGATCAGATGCGGATCACTGCCGAGACGATCCTGCCGCTGA
TCAAGTGA

Upstream 100 bases:

>100_bases
CCAAACCAGATTGCCGAAGGCGGCGAGAGTGGCCAACGATAACATGACCTTTGCCGCCCGATTGGCGGTGAACCGAGCTG
CACCTGTCTGGGAGGACCTC

Downstream 100 bases:

>100_bases
CGAACGGAAAGACATATGCCCTGCGGCTCGCGGGCCGTGAGGGGCAGGGGATCCGAGACATGCGCATCAAGACCATAGAG
GCCTGGTGGATTAAAATTCC

Product: putative epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVHETRALLKEHGIRCWGAVTLTLGERNLAARDEGQRARSVD
YVKSVITMVSELDGEIVTLVPATVGKVVPDGTEEEEWTWVVDATKECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALAL
ADAVSPECGVCLDAFHLNIEEEDMYEAIRLAGKRLFDFHVADNNRFAAGLGQLDWPKIIGTLKEIGYDGAVTNEFVAPVD
RTPASKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK

Sequences:

>Translated_295_residues
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVHETRALLKEHGIRCWGAVTLTLGERNLAARDEGQRARSVD
YVKSVITMVSELDGEIVTLVPATVGKVVPDGTEEEEWTWVVDATKECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALAL
ADAVSPECGVCLDAFHLNIEEEDMYEAIRLAGKRLFDFHVADNNRFAAGLGQLDWPKIIGTLKEIGYDGAVTNEFVAPVD
RTPASKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK
>Mature_295_residues
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVHETRALLKEHGIRCWGAVTLTLGERNLAARDEGQRARSVD
YVKSVITMVSELDGEIVTLVPATVGKVVPDGTEEEEWTWVVDATKECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALAL
ADAVSPECGVCLDAFHLNIEEEDMYEAIRLAGKRLFDFHVADNNRFAAGLGQLDWPKIIGTLKEIGYDGAVTNEFVAPVD
RTPASKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=260, Percent_Identity=25.7692307692308, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 33192; Mature: 33192

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVHETRALLKEHGIRCWGAVTL
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEE
TLGERNLAARDEGQRARSVDYVKSVITMVSELDGEIVTLVPATVGKVVPDGTEEEEWTWV
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCCCEEEE
VDATKECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALALADAVSPECGVCLDAFHLNIE
EHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCCC
EEDMYEAIRLAGKRLFDFHVADNNRFAAGLGQLDWPKIIGTLKEIGYDGAVTNEFVAPVD
HHHHHHHHHHHCHHEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCC
RTPASKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK
CCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHEEEHHHHHHHCC
>Mature Secondary Structure
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVHETRALLKEHGIRCWGAVTL
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEE
TLGERNLAARDEGQRARSVDYVKSVITMVSELDGEIVTLVPATVGKVVPDGTEEEEWTWV
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCCCEEEE
VDATKECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALALADAVSPECGVCLDAFHLNIE
EHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCCC
EEDMYEAIRLAGKRLFDFHVADNNRFAAGLGQLDWPKIIGTLKEIGYDGAVTNEFVAPVD
HHHHHHHHHHHCHHEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCC
RTPASKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK
CCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA