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The map label for this gene is csgA [H]

Identifier: 116249234

GI number: 116249234

Start: 623588

End: 624280

Strand: Reverse

Name: csgA [H]

Synonym: pRL120569

Alternate gene names: 116249234

Gene position: 624280-623588 (Counterclockwise)

Preceding gene: 116249235

Following gene: 116249231

Centisome position: 71.75

GC content: 55.7

Gene sequence:

>693_bases
ATGCGATCATTAGATGCAGGGTATTCTGCCTTGGTCACTGGAGCCAGCGGAGGAATCGGAAATGCGATTTCGAGGCAGTT
GGAAATGGACAGCAACTGCGCGAAGGTTGCCCGCCTTTCTCGTCAAGAGAACGGGTTCGACCTTACGGACGAGAATTCCG
TGCAGCGCGCGGCGGACATGCTCAAGTCGAATGAGTTTGATCTCATCATCTGTGCCACAGGTGCTTTGACGATTGACGGC
ATGGGACCGGAGAAGTCGATACGCCAGATTTCGCAAAATGCCATGATGGCCCAGTTTGCCGTCAACGCCGTTGGACCCGC
TCTCGTCGTCAAGCACTTCGTTCCGCTGCTCGCAAAGAAGAAGCGGGTAATTTTCGCCCTCCTATCGGCGCGGGTGGGAT
CGATCGGCGACAATGCGCTGGGAGGCTGGATTTCATATCGCTCGTCGAAGGCTGCGCTCAACCAGATCGTTCACACAGCC
GCAATAGAAGTGGCCCGGGCGAACCCATTGTCCTTGCTTGTGACCGTGCATCCCGGGACCGTCATAACTCAACTGTCCGA
TCCATTCGCATCGGACCACCCGCGTTCAGCGCCTGATGAAGCCGCCAAGCGAATATTGCGGATGCTGGACGATTTGACAC
CACACCATACGGGCGGTTTCTTCGCATATGATGGAACAACCATTCCTTGGTAA

Upstream 100 bases:

>100_bases
ATCGGATCAGGCGCGTTTCACAATGCTGGCCCGCGGTTGAAACCGGCCTCCTGACGACAATGAATCGCAATCTCGAGAAC
CCCGGATGACCGAAACGCTG

Downstream 100 bases:

>100_bases
CCGCGATTGGTCCGACAGTCGCAACGCAACGGGCCATTCTGAAAGTATTTGCAGGTTCTTATCAATCCGGTACGCAATCT
CATCTTCATTCGGTGACGAG

Product: putative short-chain dehydrogenase/oxidoreductase

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRSLDAGYSALVTGASGGIGNAISRQLEMDSNCAKVARLSRQENGFDLTDENSVQRAADMLKSNEFDLIICATGALTIDG
MGPEKSIRQISQNAMMAQFAVNAVGPALVVKHFVPLLAKKKRVIFALLSARVGSIGDNALGGWISYRSSKAALNQIVHTA
AIEVARANPLSLLVTVHPGTVITQLSDPFASDHPRSAPDEAAKRILRMLDDLTPHHTGGFFAYDGTTIPW

Sequences:

>Translated_230_residues
MRSLDAGYSALVTGASGGIGNAISRQLEMDSNCAKVARLSRQENGFDLTDENSVQRAADMLKSNEFDLIICATGALTIDG
MGPEKSIRQISQNAMMAQFAVNAVGPALVVKHFVPLLAKKKRVIFALLSARVGSIGDNALGGWISYRSSKAALNQIVHTA
AIEVARANPLSLLVTVHPGTVITQLSDPFASDHPRSAPDEAAKRILRMLDDLTPHHTGGFFAYDGTTIPW
>Mature_230_residues
MRSLDAGYSALVTGASGGIGNAISRQLEMDSNCAKVARLSRQENGFDLTDENSVQRAADMLKSNEFDLIICATGALTIDG
MGPEKSIRQISQNAMMAQFAVNAVGPALVVKHFVPLLAKKKRVIFALLSARVGSIGDNALGGWISYRSSKAALNQIVHTA
AIEVARANPLSLLVTVHPGTVITQLSDPFASDHPRSAPDEAAKRILRMLDDLTPHHTGGFFAYDGTTIPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322779, Length=195, Percent_Identity=29.2307692307692, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 24542; Mature: 24542

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLDAGYSALVTGASGGIGNAISRQLEMDSNCAKVARLSRQENGFDLTDENSVQRAADM
CCCCCCCCHHEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LKSNEFDLIICATGALTIDGMGPEKSIRQISQNAMMAQFAVNAVGPALVVKHFVPLLAKK
HHCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRVIFALLSARVGSIGDNALGGWISYRSSKAALNQIVHTAAIEVARANPLSLLVTVHPGT
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
VITQLSDPFASDHPRSAPDEAAKRILRMLDDLTPHHTGGFFAYDGTTIPW
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MRSLDAGYSALVTGASGGIGNAISRQLEMDSNCAKVARLSRQENGFDLTDENSVQRAADM
CCCCCCCCHHEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LKSNEFDLIICATGALTIDGMGPEKSIRQISQNAMMAQFAVNAVGPALVVKHFVPLLAKK
HHCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRVIFALLSARVGSIGDNALGGWISYRSSKAALNQIVHTAAIEVARANPLSLLVTVHPGT
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
VITQLSDPFASDHPRSAPDEAAKRILRMLDDLTPHHTGGFFAYDGTTIPW
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]