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The map label for this gene is yfkH [H]

Identifier: 116249043

GI number: 116249043

Start: 403573

End: 404652

Strand: Reverse

Name: yfkH [H]

Synonym: pRL120374

Alternate gene names: 116249043

Gene position: 404652-403573 (Counterclockwise)

Preceding gene: 116249044

Following gene: 116249042

Centisome position: 46.51

GC content: 60.93

Gene sequence:

>1080_bases
ATGCCAGATGTACTTCACCTCAAGAAGTTCCCCATTGCGGCGACAATGATGGCCGCAGCGATTGGCGCATTTGTCTTGAT
GCAGGCAACTGATCGCAGGTCGGTCGCCCCGTCTGCGGATACCGTCCGCGCAGCTGACGATCATGGCCGCAGCGCCAGCA
CGCCCGAGGCTATCCCCTTCAGCGGCCTTCGAGACGTGTTCTGGCGCGTCTTCCACGAGGTCCTCGCCGACCGGGTCACG
CTGATTGCCGCGGGCGTGACCTTCTATCTGCTGCTGGCGCTGTTTCCAGCCATGGCGGCTTTGGTATCGCTCTACGGGCT
GGTTGCAGATCCGGCCACCATATCCGAACATCTTCGCGAATTGGCTGGCCTCATGCCATCCGGAGCGTTCGATCTTCTTG
CCAATCAGATCAAGGAACTCGTTGATCGGCGCGATGCTACGCTCGGCATCACCTTCTTCGTCGGCCTCGGTATCGCCCTC
TGGAGCACGCATAGCGGCACGCTGGCGATCTTCGACGCGATGAACGTCGCCTATGAGGAGGAGGAGAAGCGGGGGCTTAT
CCGATTGAACCTGATCGGCCTCTGCTTCACCTTGTGCGCAATGCTTTTGACGGTAGTCATGGTGGCGCTCGTCGGGGTCA
TGCCGGTTGTTCTCTCCTATCTCTGGCTCGATCAGTTCAAGGAGCACATGGCCCTTCTCCTGCGATGGCCGCTGCTTCTG
CTGGTCGTCGCAGTGGCCGTTACATCGGTCTACCGCTTCGGCCCCAGCCGGGAGCCTGCCAAGCTCCGGTGGATGACATG
GGGCGCGGTTCTGACTACGGTCGCCTGGACCGCCATGTCCCTCGGCTTCTCCTACTATCTGGATCATTTCGCCAATTACA
ACGCGACCTACGGCACGCTCGGCGCACTGATCGGCTTCCTCATCTGGATCTGGCTTTCCGTCGTCATTCTCATCGTCGGA
GGGGAGCTTAACGCCGAACTGGAGCATCAGACCGCGAAGGACACGACGACGGGAACGCCGCTGCCGATGGGAGCGCGCGG
AGCCTATGTCGCGGACACTCTGGGCGAGACCATGAACTGA

Upstream 100 bases:

>100_bases
GGCCCCCTCGGCCCTGCATCAAATGTCCGCAGGAAAGCAACGGCTTGCATCCTTTAGCGGCACCCTGCGTTATCTCCGCA
CCAGATCGGAGAACATCCTC

Downstream 100 bases:

>100_bases
CCGGGAAGATTGCTCCTCTCCTATGGTTTTGATGTATTCTGCCATTTCGCCAGTCGCGACACAGGAGACGATGATGACCG
CCCCGCATCCTTCCAAAACC

Product: ribonuclease domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MPDVLHLKKFPIAATMMAAAIGAFVLMQATDRRSVAPSADTVRAADDHGRSASTPEAIPFSGLRDVFWRVFHEVLADRVT
LIAAGVTFYLLLALFPAMAALVSLYGLVADPATISEHLRELAGLMPSGAFDLLANQIKELVDRRDATLGITFFVGLGIAL
WSTHSGTLAIFDAMNVAYEEEEKRGLIRLNLIGLCFTLCAMLLTVVMVALVGVMPVVLSYLWLDQFKEHMALLLRWPLLL
LVVAVAVTSVYRFGPSREPAKLRWMTWGAVLTTVAWTAMSLGFSYYLDHFANYNATYGTLGALIGFLIWIWLSVVILIVG
GELNAELEHQTAKDTTTGTPLPMGARGAYVADTLGETMN

Sequences:

>Translated_359_residues
MPDVLHLKKFPIAATMMAAAIGAFVLMQATDRRSVAPSADTVRAADDHGRSASTPEAIPFSGLRDVFWRVFHEVLADRVT
LIAAGVTFYLLLALFPAMAALVSLYGLVADPATISEHLRELAGLMPSGAFDLLANQIKELVDRRDATLGITFFVGLGIAL
WSTHSGTLAIFDAMNVAYEEEEKRGLIRLNLIGLCFTLCAMLLTVVMVALVGVMPVVLSYLWLDQFKEHMALLLRWPLLL
LVVAVAVTSVYRFGPSREPAKLRWMTWGAVLTTVAWTAMSLGFSYYLDHFANYNATYGTLGALIGFLIWIWLSVVILIVG
GELNAELEHQTAKDTTTGTPLPMGARGAYVADTLGETMN
>Mature_358_residues
PDVLHLKKFPIAATMMAAAIGAFVLMQATDRRSVAPSADTVRAADDHGRSASTPEAIPFSGLRDVFWRVFHEVLADRVTL
IAAGVTFYLLLALFPAMAALVSLYGLVADPATISEHLRELAGLMPSGAFDLLANQIKELVDRRDATLGITFFVGLGIALW
STHSGTLAIFDAMNVAYEEEEKRGLIRLNLIGLCFTLCAMLLTVVMVALVGVMPVVLSYLWLDQFKEHMALLLRWPLLLL
VVAVAVTSVYRFGPSREPAKLRWMTWGAVLTTVAWTAMSLGFSYYLDHFANYNATYGTLGALIGFLIWIWLSVVILIVGG
ELNAELEHQTAKDTTTGTPLPMGARGAYVADTLGETMN

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 39141; Mature: 39010

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVLHLKKFPIAATMMAAAIGAFVLMQATDRRSVAPSADTVRAADDHGRSASTPEAIPF
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGLRDVFWRVFHEVLADRVTLIAAGVTFYLLLALFPAMAALVSLYGLVADPATISEHLRE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LAGLMPSGAFDLLANQIKELVDRRDATLGITFFVGLGIALWSTHSGTLAIFDAMNVAYEE
HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
EEKRGLIRLNLIGLCFTLCAMLLTVVMVALVGVMPVVLSYLWLDQFKEHMALLLRWPLLL
HHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVAVAVTSVYRFGPSREPAKLRWMTWGAVLTTVAWTAMSLGFSYYLDHFANYNATYGTL
HHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GALIGFLIWIWLSVVILIVGGELNAELEHQTAKDTTTGTPLPMGARGAYVADTLGETMN
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
PDVLHLKKFPIAATMMAAAIGAFVLMQATDRRSVAPSADTVRAADDHGRSASTPEAIPF
CCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGLRDVFWRVFHEVLADRVTLIAAGVTFYLLLALFPAMAALVSLYGLVADPATISEHLRE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LAGLMPSGAFDLLANQIKELVDRRDATLGITFFVGLGIALWSTHSGTLAIFDAMNVAYEE
HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
EEKRGLIRLNLIGLCFTLCAMLLTVVMVALVGVMPVVLSYLWLDQFKEHMALLLRWPLLL
HHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVAVAVTSVYRFGPSREPAKLRWMTWGAVLTTVAWTAMSLGFSYYLDHFANYNATYGTL
HHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GALIGFLIWIWLSVVILIVGGELNAELEHQTAKDTTTGTPLPMGARGAYVADTLGETMN
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]