Click here to switch to the map view.

The map label for this gene is yagR [H]

Identifier: 116248969

GI number: 116248969

Start: 317349

End: 319547

Strand: Reverse

Name: yagR [H]

Synonym: pRL120300

Alternate gene names: 116248969

Gene position: 319547-317349 (Counterclockwise)

Preceding gene: 116248970

Following gene: 116248968

Centisome position: 36.73

GC content: 62.76

Gene sequence:

>2199_bases
ATGCAGTTCGATACGCCAGCGACAACCAACCCGATCGACAATCTGAAGGTCGTCGGCCAGCCGATCCACCGCATCGATGG
TCAGCTCAAGACGACCGGCCGCGCGATGTACGCCTATGAGTGGCACGATCCGAATATGTCCTACGCCTACGGTTATCCCG
TTGGCGCGGCCATCGCCAAGGGCCGCATCACGTCCATGGACGTTTCCGCCGCCAAAAAGGCTCCGGGCGTGCTTGCCGTC
GTGACGACGCTCGATATCGGCGAGCGGAAGAAGGGCAGGTTCAACACCGCCAAGCTTTTCGGTGGCGACGAGGTTCAGCA
CTATCACCAGGCAATCGCGGTCGTCGTCGCCGAGACCTTCGAGCAGGCACGCGCCGCAGCCTCCCTGGTCAAGGTCGACT
ATGCCGAAGAAAAGGGTGTGTTCGATCTCGGTCAGGCAAAGGATTCAGCCGTCAAGCCGGATGAATCTCAGCAGCCCGAT
ACAGCGGTCGGCGACTTCGAGGCTGCCTTCAGGTCAGCTCCCGTCACTGTCGACGCGTCTTACACGACGCCCGACCAGTC
GCATGCGATGATGGAGCCGCACGCATCGATCGCAGCCTGGAACGGCGACGAGGTGACCGTCTGGACCTCCAGCCAGATGA
TCGACTGGTGGCGCTCCGACCTTGCAACGACGCTCGACATCGACAAGGAGAATATCCACCTCATGTCGCCGTTCATCGGC
GGCGGCTTCGGCGGCAAGCTGTTCCTGCGGGCGGATGCCGTGCTGGCCGTTGTCGGTGCGCGTGCGGTCAAGCGGCCCGT
CAAGGTCGCCTTGCCTCGCCCCCTCCTGATAAACAACACCACCCATCGGCCGGCGACGATCCAGCGGATCCGCATTGGAA
CCGAGCGTGACGGCAAGATCACTGCCATTGCGCACGAAAGCTGGTCCGGCGACCTTCCGGGCGGCGGACTGGAGACCGCC
GTCAACCAGACGCGGCTCCTCTATGCGGGTGCAAACCGGATGACCGCAATGCGTCTTGCGACGCTTCATCTCCCGGAGGG
CAATGCCATGCGCGCTCCGGGCGAAGCCCCCGGACTGATGGCGCTCGAAATCGCCATCGACGAGATTGCCGAAAAAGTTG
GGATCGATCCTGTACAATTTCGGATCGTCAACGACACGCAGGTCGATCCGGAAAAGCCGCAGCGGCCTTTTTCCCAGCGC
AATCTCGTCGGCTGCCTCACACTAGGTGCGGAGCGGTTTGGCTGGCGTGAAAGAGGAAAGCCGGGTTCCAGACGGGATGG
CAGCTGGCTGGTCGGCATGGGCGTCGCCGTTGCCTTCCGCAACAACCTCGTCCTTCCCTCCGGAGCCCGGGTAAAGCTCG
ACCGGGAAGGCGTCGTGACTGTGGAAACCGACATGACCGACATCGGAACCGGCAGCTACACGATCATCGCCCAGACGGCG
GCCGAGATGATGGGGGTCACGATCGACAAGGTCGCCGTCCAACTCGGCGACTCGCGTTTTCCGGTTTCTGCGGGTTCCGG
CGGACAGTTCGGTGCGAACTCTTCCACGTCTGGCGTCTACGCAGCCTGTGTCAAGCTGCGTGAGGCCATCGCCAAGAAGC
TCGGCTTCAACTCCGAAGACATCGTCTTCGAGAATGGCGAGGTCCGCTCGGGCAATCGTTCGGTGCCTCTTGCCGAAGCC
GCCGGTCCGGATGGCCTTGTCGGCGAAGACACCATCAAGTGGGGCGAGCTCACCGAAACGCATCAGCAATCGACATTCGG
CGCGCACTTCGTCGAGGTTGGCGTCGACATTGCCACTGGGGAAAGCCGGATCCGCAGGATGCTCGCAGTCTGTGCGGCGG
GAAGAATCCTTAATCCGATCACCGCCCGAAGCCAGGTCATCGGCGCGATGACGATGGGGGCGGGCGGCGCGCTGTCCGAG
GAATTGGCGGTCGACACCCGTCGCGGCTTCTTCGTCAACCACGATCTCGCCAGCTATGAAGTGGCGGTGCATGCCGACAT
TCCGCACCAGGAGGTGATCTTCATGGACGAGACCGATCCGATGTCCTCGCCGATGAAGGCAAAGGGCGTCGGCGAGCTTG
GCCTTTGCGGCGTCGCGGCAGCAATCGCCAACGCCGTCTATAACGCGACCGGCGTCAGGGTCCGGCACTATCCGCTGACA
CTTGACAAGCTCATCGGTGGCTTGCCGGATGTGGCCTGA

Upstream 100 bases:

>100_bases
GCTTCTTGCCGGCGCGCACCCGACCGAACAGAACCGTTTCAAGGTCGACCTGGTCGAGCGCACGCTCGGCGCGGTCATTG
CCGAAGCAAGGGGTTGAGCC

Downstream 100 bases:

>100_bases
TTATTTCGGCGGTGGTCTCGAAAGCGGACCCCCGTCACTTCCTGTAGGATTTCCGATGGATCAGACACTTGCGCCCATCA
CGGCGCCAATTCCCGTCAGG

Product: putative xanthine dehydrogenase YagR, molybdenum binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 732

Protein sequence:

>732_residues
MQFDTPATTNPIDNLKVVGQPIHRIDGQLKTTGRAMYAYEWHDPNMSYAYGYPVGAAIAKGRITSMDVSAAKKAPGVLAV
VTTLDIGERKKGRFNTAKLFGGDEVQHYHQAIAVVVAETFEQARAAASLVKVDYAEEKGVFDLGQAKDSAVKPDESQQPD
TAVGDFEAAFRSAPVTVDASYTTPDQSHAMMEPHASIAAWNGDEVTVWTSSQMIDWWRSDLATTLDIDKENIHLMSPFIG
GGFGGKLFLRADAVLAVVGARAVKRPVKVALPRPLLINNTTHRPATIQRIRIGTERDGKITAIAHESWSGDLPGGGLETA
VNQTRLLYAGANRMTAMRLATLHLPEGNAMRAPGEAPGLMALEIAIDEIAEKVGIDPVQFRIVNDTQVDPEKPQRPFSQR
NLVGCLTLGAERFGWRERGKPGSRRDGSWLVGMGVAVAFRNNLVLPSGARVKLDREGVVTVETDMTDIGTGSYTIIAQTA
AEMMGVTIDKVAVQLGDSRFPVSAGSGGQFGANSSTSGVYAACVKLREAIAKKLGFNSEDIVFENGEVRSGNRSVPLAEA
AGPDGLVGEDTIKWGELTETHQQSTFGAHFVEVGVDIATGESRIRRMLAVCAAGRILNPITARSQVIGAMTMGAGGALSE
ELAVDTRRGFFVNHDLASYEVAVHADIPHQEVIFMDETDPMSSPMKAKGVGELGLCGVAAAIANAVYNATGVRVRHYPLT
LDKLIGGLPDVA

Sequences:

>Translated_732_residues
MQFDTPATTNPIDNLKVVGQPIHRIDGQLKTTGRAMYAYEWHDPNMSYAYGYPVGAAIAKGRITSMDVSAAKKAPGVLAV
VTTLDIGERKKGRFNTAKLFGGDEVQHYHQAIAVVVAETFEQARAAASLVKVDYAEEKGVFDLGQAKDSAVKPDESQQPD
TAVGDFEAAFRSAPVTVDASYTTPDQSHAMMEPHASIAAWNGDEVTVWTSSQMIDWWRSDLATTLDIDKENIHLMSPFIG
GGFGGKLFLRADAVLAVVGARAVKRPVKVALPRPLLINNTTHRPATIQRIRIGTERDGKITAIAHESWSGDLPGGGLETA
VNQTRLLYAGANRMTAMRLATLHLPEGNAMRAPGEAPGLMALEIAIDEIAEKVGIDPVQFRIVNDTQVDPEKPQRPFSQR
NLVGCLTLGAERFGWRERGKPGSRRDGSWLVGMGVAVAFRNNLVLPSGARVKLDREGVVTVETDMTDIGTGSYTIIAQTA
AEMMGVTIDKVAVQLGDSRFPVSAGSGGQFGANSSTSGVYAACVKLREAIAKKLGFNSEDIVFENGEVRSGNRSVPLAEA
AGPDGLVGEDTIKWGELTETHQQSTFGAHFVEVGVDIATGESRIRRMLAVCAAGRILNPITARSQVIGAMTMGAGGALSE
ELAVDTRRGFFVNHDLASYEVAVHADIPHQEVIFMDETDPMSSPMKAKGVGELGLCGVAAAIANAVYNATGVRVRHYPLT
LDKLIGGLPDVA
>Mature_732_residues
MQFDTPATTNPIDNLKVVGQPIHRIDGQLKTTGRAMYAYEWHDPNMSYAYGYPVGAAIAKGRITSMDVSAAKKAPGVLAV
VTTLDIGERKKGRFNTAKLFGGDEVQHYHQAIAVVVAETFEQARAAASLVKVDYAEEKGVFDLGQAKDSAVKPDESQQPD
TAVGDFEAAFRSAPVTVDASYTTPDQSHAMMEPHASIAAWNGDEVTVWTSSQMIDWWRSDLATTLDIDKENIHLMSPFIG
GGFGGKLFLRADAVLAVVGARAVKRPVKVALPRPLLINNTTHRPATIQRIRIGTERDGKITAIAHESWSGDLPGGGLETA
VNQTRLLYAGANRMTAMRLATLHLPEGNAMRAPGEAPGLMALEIAIDEIAEKVGIDPVQFRIVNDTQVDPEKPQRPFSQR
NLVGCLTLGAERFGWRERGKPGSRRDGSWLVGMGVAVAFRNNLVLPSGARVKLDREGVVTVETDMTDIGTGSYTIIAQTA
AEMMGVTIDKVAVQLGDSRFPVSAGSGGQFGANSSTSGVYAACVKLREAIAKKLGFNSEDIVFENGEVRSGNRSVPLAEA
AGPDGLVGEDTIKWGELTETHQQSTFGAHFVEVGVDIATGESRIRRMLAVCAAGRILNPITARSQVIGAMTMGAGGALSE
ELAVDTRRGFFVNHDLASYEVAVHADIPHQEVIFMDETDPMSSPMKAKGVGELGLCGVAAAIANAVYNATGVRVRHYPLT
LDKLIGGLPDVA

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=738, Percent_Identity=23.7127371273713, Blast_Score=142, Evalue=1e-33,
Organism=Homo sapiens, GI91823271, Length=735, Percent_Identity=24.3537414965986, Blast_Score=139, Evalue=1e-32,
Organism=Escherichia coli, GI1786478, Length=732, Percent_Identity=68.7158469945355, Blast_Score=1001, Evalue=0.0,
Organism=Escherichia coli, GI1789230, Length=754, Percent_Identity=29.4429708222812, Blast_Score=238, Evalue=1e-63,
Organism=Escherichia coli, GI1789246, Length=763, Percent_Identity=26.343381389253, Blast_Score=183, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI17540638, Length=724, Percent_Identity=24.7237569060773, Blast_Score=150, Evalue=3e-36,
Organism=Drosophila melanogaster, GI24647199, Length=732, Percent_Identity=25.2732240437158, Blast_Score=152, Evalue=7e-37,
Organism=Drosophila melanogaster, GI24647201, Length=739, Percent_Identity=25.8457374830853, Blast_Score=144, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24647193, Length=730, Percent_Identity=23.6986301369863, Blast_Score=132, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24647195, Length=745, Percent_Identity=24.6979865771812, Blast_Score=125, Evalue=8e-29,
Organism=Drosophila melanogaster, GI24647197, Length=771, Percent_Identity=24.124513618677, Blast_Score=118, Evalue=2e-26,
Organism=Drosophila melanogaster, GI17737937, Length=702, Percent_Identity=24.7863247863248, Blast_Score=114, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 78227; Mature: 78227

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDTPATTNPIDNLKVVGQPIHRIDGQLKTTGRAMYAYEWHDPNMSYAYGYPVGAAIAK
CCCCCCCCCCCCCCHHCCCCCHHHCCCCEEECCCEEEEEEEECCCCCEEECCCHHHHHHC
GRITSMDVSAAKKAPGVLAVVTTLDIGERKKGRFNTAKLFGGDEVQHYHQAIAVVVAETF
CCCEEEECHHHHCCCCEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
EQARAAASLVKVDYAEEKGVFDLGQAKDSAVKPDESQQPDTAVGDFEAAFRSAPVTVDAS
HHHHHHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEC
YTTPDQSHAMMEPHASIAAWNGDEVTVWTSSQMIDWWRSDLATTLDIDKENIHLMSPFIG
CCCCCCCCCCCCCCCCEEEECCCEEEEEECCHHHHHHHHCCCEEEECCCCCEEEECCCCC
GGFGGKLFLRADAVLAVVGARAVKRPVKVALPRPLLINNTTHRPATIQRIRIGTERDGKI
CCCCCEEEEEHHHHHHHHHHHHHCCCCEEECCCCEEECCCCCCCCEEEEEEECCCCCCEE
TAIAHESWSGDLPGGGLETAVNQTRLLYAGANRMTAMRLATLHLPEGNAMRAPGEAPGLM
EEEEECCCCCCCCCCCHHHHHCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
ALEIAIDEIAEKVGIDPVQFRIVNDTQVDPEKPQRPFSQRNLVGCLTLGAERFGWRERGK
EEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECHHHCCCHHCCC
PGSRRDGSWLVGMGVAVAFRNNLVLPSGARVKLDREGVVTVETDMTDIGTGSYTIIAQTA
CCCCCCCCEEEECCEEEEEECCEECCCCCEEEECCCCEEEEECCCCCCCCCCEEEEEEHH
AEMMGVTIDKVAVQLGDSRFPVSAGSGGQFGANSSTSGVYAACVKLREAIAKKLGFNSED
HHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
IVFENGEVRSGNRSVPLAEAAGPDGLVGEDTIKWGELTETHQQSTFGAHFVEVGVDIATG
EEEECCEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCEEECC
ESRIRRMLAVCAAGRILNPITARSQVIGAMTMGAGGALSEELAVDTRRGFFVNHDLASYE
HHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCCCHHHHEECCCCEEEECCCCEEE
VAVHADIPHQEVIFMDETDPMSSPMKAKGVGELGLCGVAAAIANAVYNATGVRVRHYPLT
EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
LDKLIGGLPDVA
HHHHHCCCCCCC
>Mature Secondary Structure
MQFDTPATTNPIDNLKVVGQPIHRIDGQLKTTGRAMYAYEWHDPNMSYAYGYPVGAAIAK
CCCCCCCCCCCCCCHHCCCCCHHHCCCCEEECCCEEEEEEEECCCCCEEECCCHHHHHHC
GRITSMDVSAAKKAPGVLAVVTTLDIGERKKGRFNTAKLFGGDEVQHYHQAIAVVVAETF
CCCEEEECHHHHCCCCEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
EQARAAASLVKVDYAEEKGVFDLGQAKDSAVKPDESQQPDTAVGDFEAAFRSAPVTVDAS
HHHHHHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEC
YTTPDQSHAMMEPHASIAAWNGDEVTVWTSSQMIDWWRSDLATTLDIDKENIHLMSPFIG
CCCCCCCCCCCCCCCCEEEECCCEEEEEECCHHHHHHHHCCCEEEECCCCCEEEECCCCC
GGFGGKLFLRADAVLAVVGARAVKRPVKVALPRPLLINNTTHRPATIQRIRIGTERDGKI
CCCCCEEEEEHHHHHHHHHHHHHCCCCEEECCCCEEECCCCCCCCEEEEEEECCCCCCEE
TAIAHESWSGDLPGGGLETAVNQTRLLYAGANRMTAMRLATLHLPEGNAMRAPGEAPGLM
EEEEECCCCCCCCCCCHHHHHCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
ALEIAIDEIAEKVGIDPVQFRIVNDTQVDPEKPQRPFSQRNLVGCLTLGAERFGWRERGK
EEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECHHHCCCHHCCC
PGSRRDGSWLVGMGVAVAFRNNLVLPSGARVKLDREGVVTVETDMTDIGTGSYTIIAQTA
CCCCCCCCEEEECCEEEEEECCEECCCCCEEEECCCCEEEEECCCCCCCCCCEEEEEEHH
AEMMGVTIDKVAVQLGDSRFPVSAGSGGQFGANSSTSGVYAACVKLREAIAKKLGFNSED
HHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
IVFENGEVRSGNRSVPLAEAAGPDGLVGEDTIKWGELTETHQQSTFGAHFVEVGVDIATG
EEEECCEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCEEECC
ESRIRRMLAVCAAGRILNPITARSQVIGAMTMGAGGALSEELAVDTRRGFFVNHDLASYE
HHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCCCHHHHEECCCCEEEECCCCEEE
VAVHADIPHQEVIFMDETDPMSSPMKAKGVGELGLCGVAAAIANAVYNATGVRVRHYPLT
EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
LDKLIGGLPDVA
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]