| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
Click here to switch to the map view.
The map label for this gene is prC [H]
Identifier: 116248948
GI number: 116248948
Start: 294782
End: 296896
Strand: Reverse
Name: prC [H]
Synonym: pRL120279
Alternate gene names: 116248948
Gene position: 296896-294782 (Counterclockwise)
Preceding gene: 116248949
Following gene: 116248943
Centisome position: 34.13
GC content: 57.49
Gene sequence:
>2115_bases ATGCGCATAGCCTACTTTTTCCTTGGTGCATTTCTTGCAATTGCACAGTCCGCATATGCTGAAGTCGCATCACCGCCTCT TTTGGCTCCGCTAAAGCGACAGGCGCAAGCCGCTGAGTTGAGCGCGCAATTTCTTTCGCGGTATAGCTACAGGCCCGTCC CACTCGACGACGCCTTGTCAGCCAGGATCATGGATGGGTTCATCAAGTCACTTGATCCGGATCGCATGCTCTTCCTGCAA GCCGACATCGACGGATTCATGTCCGACCGCAGCGAGATCGATGATGCCATCGAGGAGAGAAACTTGAAGATCCCGTTTGC GATCTTCAAAGCGTATCAGCAGCGCGTTGTCGACCGCATGAACTATGCGCGCAGCCTGCTTAAGCAAGGCTTCGATTTCA GCGCGCAGGAAAATTATTCGGTGCTGCGCGATAAAGCGCCGTGGCCGCAGTCGGAGGCCGAGAGCAATGAGCTTTGGCGC AAGCGCGTCAAGAGCGACTGGTTGCGGTTGAAACTGGGCGGCCAAAACGACGCGGCCATTCGAGAAACACTCGACAAACG TTATGAAAACACGCTGGAGCGCGCTTACAAGTTCAAAAGCGACGACGTTTTCCAATCGTTCATGGACGCCTACGCAACCT CGATCGATCCGCACACGGATTATTTCGGTGCGGCCGCTTCAGCCGACTTCAATGTTTCGATGAAGCTTTCGCTGTTTGGT ATCGGTGCGGTCCTGCAGGAGCGCGACGACTACACGACGATCCGTGAGCTCGTTCCTGGCGGACCGGCACAGCTGTCCGG CAAGCTCTCGGTCGGAGATCGAATTACCGGCGTTGGTCAAGGCAAGGACGGCGCAATCAAGGACGTGGTGGGCACGCGCC TTGATGAAGTCGTGCAGATGATACGCGGGAAAAAAGGTTCCGTCGTGCGGCTGGACATCCTGCCGGCAGATGCCGGAGCC GAGGGCACGCATCGCGTCATCAGCCTGGTGCGCGATAAAATCAGTCTCGACAAGCAGGCCGCCCGGAAGACTGTACTGTC CGTAAAAGCGGGCGACGCCACGCGTAAAATCGGGATCATTACGCTGCCGGTATTCTATGAGGATTTTGAAGCCAAGCGCA AAGGAGACAAGGACTACAAAAGCGCAAGCCGTGATGTCGCCAAGCTTCTCGGCGAGCTGAGCGAAGAAAAGGTCGACAGC GTTCTCATCGACCTGCGCAACAACGGCGGCGGTTCATTGGACGAGGCGATCGATTTGACCGGCCTGTTCATCGGCAATGG CCCGGTCGTTCAGCAACGCGGCAGCGATGGCAAAGTCGAAGTGAGGAGCTCGGATCTTGCGGCCCCTGTCTGGACAGGCC CGGTGGGTGTCCTGATCAATCGCGGATCGGCTTCGGCGTCGGAGATTTTTGCCGCGGCAATCCAGGATTACGGTCGAGGC GTGATCGTCGGCGAACCCAGTTTCGGGAAGGGCACCGTTCAGACCGTCGTCGATCTTGACCGGATCGTCCGCAACAGCAA ACCCGAGTTGGGGGAGCTGAAGGTGACGATTGCCCAGTTTTTCCGGGTCAACGGCGGGACGACGCAGTTGCACGGCGTAA CGCCCGATATCGGCTTGCCAGGACTTTCCGATCCGACGAGCTTCGGCGAGACCAGTTATGACAATGCCCTGCCGTGGGCT CAGATTAAACCTGCGAAATACACGGCCGCCGACACTGTCACGACGTTGCTGCCGACATTGCAAAGCCGCCATGATGCGCG GATTGAGAGCGATCCGGACTTCCAACGCCTGATAAAAGACATTGCCGACCTCAAGGCGCAGCGGGAAAAAGGAATTGTTT CCCTCAATGAAACCGAACGTCGCAAAGAAGCGACGGCGCGCGAGAAACGGTTCAAGGATCGAGCGAAAGCAGGGGATGGC GAGGATCTTGGAGATGACGGCCTGGAGGCAGGCGAGCGCAGCCTGAGCGCTGATATTGCCATCGAGAATGCCCGCAAGAA CGCAAAAGACGTCCTGCTCGACGAGGCAGCCGCCATTCTTGCTGACGAGGCGGATCTGCAGCAAGGCGTGCTGAAGGCAG CCACCAAACAATCAGGAAACACGAACGGAAAATAA
Upstream 100 bases:
>100_bases TTGCAAACCATGTCGTTTGCCATTTGGTTGCCAAAAAACCATGATTGCGTCACATAGATCGCACATCGACACTCGGCATC AAGAATTGGATCAACGCTGA
Downstream 100 bases:
>100_bases TCGTCGATGACCGGCGCAACGGTGTGCGCAGCTTTGCGATCACCTTGGCGTGATCGGCCTGGGTTCAGGTCCTTTCAAGG CGAGGGATTTCGTTGGCGAT
Product: putative exported tail-specific protease precursor
Products: NA
Alternate protein names: C-terminal-processing peptidase; PRC protein; Protease Re [H]
Number of amino acids: Translated: 704; Mature: 704
Protein sequence:
>704_residues MRIAYFFLGAFLAIAQSAYAEVASPPLLAPLKRQAQAAELSAQFLSRYSYRPVPLDDALSARIMDGFIKSLDPDRMLFLQ ADIDGFMSDRSEIDDAIEERNLKIPFAIFKAYQQRVVDRMNYARSLLKQGFDFSAQENYSVLRDKAPWPQSEAESNELWR KRVKSDWLRLKLGGQNDAAIRETLDKRYENTLERAYKFKSDDVFQSFMDAYATSIDPHTDYFGAAASADFNVSMKLSLFG IGAVLQERDDYTTIRELVPGGPAQLSGKLSVGDRITGVGQGKDGAIKDVVGTRLDEVVQMIRGKKGSVVRLDILPADAGA EGTHRVISLVRDKISLDKQAARKTVLSVKAGDATRKIGIITLPVFYEDFEAKRKGDKDYKSASRDVAKLLGELSEEKVDS VLIDLRNNGGGSLDEAIDLTGLFIGNGPVVQQRGSDGKVEVRSSDLAAPVWTGPVGVLINRGSASASEIFAAAIQDYGRG VIVGEPSFGKGTVQTVVDLDRIVRNSKPELGELKVTIAQFFRVNGGTTQLHGVTPDIGLPGLSDPTSFGETSYDNALPWA QIKPAKYTAADTVTTLLPTLQSRHDARIESDPDFQRLIKDIADLKAQREKGIVSLNETERRKEATAREKRFKDRAKAGDG EDLGDDGLEAGERSLSADIAIENARKNAKDVLLDEAAAILADEADLQQGVLKAATKQSGNTNGK
Sequences:
>Translated_704_residues MRIAYFFLGAFLAIAQSAYAEVASPPLLAPLKRQAQAAELSAQFLSRYSYRPVPLDDALSARIMDGFIKSLDPDRMLFLQ ADIDGFMSDRSEIDDAIEERNLKIPFAIFKAYQQRVVDRMNYARSLLKQGFDFSAQENYSVLRDKAPWPQSEAESNELWR KRVKSDWLRLKLGGQNDAAIRETLDKRYENTLERAYKFKSDDVFQSFMDAYATSIDPHTDYFGAAASADFNVSMKLSLFG IGAVLQERDDYTTIRELVPGGPAQLSGKLSVGDRITGVGQGKDGAIKDVVGTRLDEVVQMIRGKKGSVVRLDILPADAGA EGTHRVISLVRDKISLDKQAARKTVLSVKAGDATRKIGIITLPVFYEDFEAKRKGDKDYKSASRDVAKLLGELSEEKVDS VLIDLRNNGGGSLDEAIDLTGLFIGNGPVVQQRGSDGKVEVRSSDLAAPVWTGPVGVLINRGSASASEIFAAAIQDYGRG VIVGEPSFGKGTVQTVVDLDRIVRNSKPELGELKVTIAQFFRVNGGTTQLHGVTPDIGLPGLSDPTSFGETSYDNALPWA QIKPAKYTAADTVTTLLPTLQSRHDARIESDPDFQRLIKDIADLKAQREKGIVSLNETERRKEATAREKRFKDRAKAGDG EDLGDDGLEAGERSLSADIAIENARKNAKDVLLDEAAAILADEADLQQGVLKAATKQSGNTNGK >Mature_704_residues MRIAYFFLGAFLAIAQSAYAEVASPPLLAPLKRQAQAAELSAQFLSRYSYRPVPLDDALSARIMDGFIKSLDPDRMLFLQ ADIDGFMSDRSEIDDAIEERNLKIPFAIFKAYQQRVVDRMNYARSLLKQGFDFSAQENYSVLRDKAPWPQSEAESNELWR KRVKSDWLRLKLGGQNDAAIRETLDKRYENTLERAYKFKSDDVFQSFMDAYATSIDPHTDYFGAAASADFNVSMKLSLFG IGAVLQERDDYTTIRELVPGGPAQLSGKLSVGDRITGVGQGKDGAIKDVVGTRLDEVVQMIRGKKGSVVRLDILPADAGA EGTHRVISLVRDKISLDKQAARKTVLSVKAGDATRKIGIITLPVFYEDFEAKRKGDKDYKSASRDVAKLLGELSEEKVDS VLIDLRNNGGGSLDEAIDLTGLFIGNGPVVQQRGSDGKVEVRSSDLAAPVWTGPVGVLINRGSASASEIFAAAIQDYGRG VIVGEPSFGKGTVQTVVDLDRIVRNSKPELGELKVTIAQFFRVNGGTTQLHGVTPDIGLPGLSDPTSFGETSYDNALPWA QIKPAKYTAADTVTTLLPTLQSRHDARIESDPDFQRLIKDIADLKAQREKGIVSLNETERRKEATAREKRFKDRAKAGDG EDLGDDGLEAGERSLSADIAIENARKNAKDVLLDEAAAILADEADLQQGVLKAATKQSGNTNGK
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=627, Percent_Identity=44.0191387559809, Blast_Score=487, Evalue=1e-138,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 76893; Mature: 76893
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIAYFFLGAFLAIAQSAYAEVASPPLLAPLKRQAQAAELSAQFLSRYSYRPVPLDDALS CEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH ARIMDGFIKSLDPDRMLFLQADIDGFMSDRSEIDDAIEERNLKIPFAIFKAYQQRVVDRM HHHHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH NYARSLLKQGFDFSAQENYSVLRDKAPWPQSEAESNELWRKRVKSDWLRLKLGGQNDAAI HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHH RETLDKRYENTLERAYKFKSDDVFQSFMDAYATSIDPHTDYFGAAASADFNVSMKLSLFG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEE IGAVLQERDDYTTIRELVPGGPAQLSGKLSVGDRITGVGQGKDGAIKDVVGTRLDEVVQM HHHHHHCCCCHHHHHHHCCCCCHHCCCCEECCCCEEECCCCCCCCHHHHHHHHHHHHHHH IRGKKGSVVRLDILPADAGAEGTHRVISLVRDKISLDKQAARKTVLSVKAGDATRKIGII HCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEE TLPVFYEDFEAKRKGDKDYKSASRDVAKLLGELSEEKVDSVLIDLRNNGGGSLDEAIDLT EECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHCEE GLFIGNGPVVQQRGSDGKVEVRSSDLAAPVWTGPVGVLINRGSASASEIFAAAIQDYGRG EEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCE VIVGEPSFGKGTVQTVVDLDRIVRNSKPELGELKVTIAQFFRVNGGTTQLHGVTPDIGLP EEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC GLSDPTSFGETSYDNALPWAQIKPAKYTAADTVTTLLPTLQSRHDARIESDPDFQRLIKD CCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH IADLKAQREKGIVSLNETERRKEATAREKRFKDRAKAGDGEDLGDDGLEAGERSLSADIA HHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEE IENARKNAKDVLLDEAAAILADEADLQQGVLKAATKQSGNTNGK EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRIAYFFLGAFLAIAQSAYAEVASPPLLAPLKRQAQAAELSAQFLSRYSYRPVPLDDALS CEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH ARIMDGFIKSLDPDRMLFLQADIDGFMSDRSEIDDAIEERNLKIPFAIFKAYQQRVVDRM HHHHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH NYARSLLKQGFDFSAQENYSVLRDKAPWPQSEAESNELWRKRVKSDWLRLKLGGQNDAAI HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHH RETLDKRYENTLERAYKFKSDDVFQSFMDAYATSIDPHTDYFGAAASADFNVSMKLSLFG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEE IGAVLQERDDYTTIRELVPGGPAQLSGKLSVGDRITGVGQGKDGAIKDVVGTRLDEVVQM HHHHHHCCCCHHHHHHHCCCCCHHCCCCEECCCCEEECCCCCCCCHHHHHHHHHHHHHHH IRGKKGSVVRLDILPADAGAEGTHRVISLVRDKISLDKQAARKTVLSVKAGDATRKIGII HCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEE TLPVFYEDFEAKRKGDKDYKSASRDVAKLLGELSEEKVDSVLIDLRNNGGGSLDEAIDLT EECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHCEE GLFIGNGPVVQQRGSDGKVEVRSSDLAAPVWTGPVGVLINRGSASASEIFAAAIQDYGRG EEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCE VIVGEPSFGKGTVQTVVDLDRIVRNSKPELGELKVTIAQFFRVNGGTTQLHGVTPDIGLP EEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC GLSDPTSFGETSYDNALPWAQIKPAKYTAADTVTTLLPTLQSRHDARIESDPDFQRLIKD CCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH IADLKAQREKGIVSLNETERRKEATAREKRFKDRAKAGDGEDLGDDGLEAGERSLSADIA HHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEE IENARKNAKDVLLDEAAAILADEADLQQGVLKAATKQSGNTNGK EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1856173; 1729701; 9097040; 9278503; 1447154; 10049386; 7499412; 8576225 [H]