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The map label for this gene is potC [H]

Identifier: 116248840

GI number: 116248840

Start: 169881

End: 170681

Strand: Reverse

Name: potC [H]

Synonym: pRL120169

Alternate gene names: 116248840

Gene position: 170681-169881 (Counterclockwise)

Preceding gene: 116248841

Following gene: 116248838

Centisome position: 19.62

GC content: 55.93

Gene sequence:

>801_bases
ATGGAAGGCATAAAAGACATGTCGAAACCCTTCCTCACGGTGTACTGCCTGGTCATCTACGCCTTTCTCCTGGCGCCGAT
CTTGGTCGTCGTCGGGGCGTCGTTCAATGCCGGCGCCTTCCTCACCTTCCCGCCGCAGGGGTTGTCATTTCGCTGGTATC
TGGTGTTCTTCAACAACGAAGTGTTCATGCGGGCAATCCGCACTTCCTTGTGGATCGCGACGCTGACCACGATAATCTCC
GGCATCATAGGAACGATGGCGGCGATGTTCTATGTGCAGTATGCTGGTAAGTTCAAGGACACGGTGCGGATCGCCATGCT
GGCGCCGTTGCTGTTGCCGGAAGTCCTGACTGCGATCTCGCTGCTGTTTTTCGTCTATTCGATCGGTATCGGCACGCAGA
CGATCGTTGGTCTGCTCCTCGGCCACGTGCTGATCACGCTGCCCTTCGTATTCATCAACGTCTCGGCGTCGATGGAAAGC
TATGATCCGTCCTGGAGCTTGGCGGCGCAAAGTCTCGGGGCCGGCCGTTTCACCCGTTTCCGGCGGATCATGCTGCCACT
GATCAAGCCCGGTGTCATCGGCGGCTGCCTGTTCGCCTTCATCGTCTCATTTGACGTCTTCACCATTTCCTTCATGCTGA
AGAATGTCGGCACATCGACGCTGCCGATCCAGTTGTTCGATTACCTGCGCACCAATTTTACGCCCGAGGCGGCAGCGGTC
TCGACTTGCTCGATTATTTTGACACTCATCGTGGTGGTCGTTTGTGAGAAGATACTTGGCTTACGCATTCATCGGTTCTG
A

Upstream 100 bases:

>100_bases
TCGACACGTTCCAATGGCCGTTCGGTTCCGCGCTGGCGCTGATGTTGTCGGTCACAGGCGCGATCGTGGTGGTCATCTTC
GGGCGGCTGACCGTCATGAA

Downstream 100 bases:

>100_bases
TCGGGCATCTGAAGCGTTTTTGAAGTAGCCAGTCACGCATCATCTCTTTCGGATGCGATCGTCATCGTTACCTCAGTGCT
ACCGGCTGATGTTTCCGAGC

Product: putative permease component of ABC transporter

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MEGIKDMSKPFLTVYCLVIYAFLLAPILVVVGASFNAGAFLTFPPQGLSFRWYLVFFNNEVFMRAIRTSLWIATLTTIIS
GIIGTMAAMFYVQYAGKFKDTVRIAMLAPLLLPEVLTAISLLFFVYSIGIGTQTIVGLLLGHVLITLPFVFINVSASMES
YDPSWSLAAQSLGAGRFTRFRRIMLPLIKPGVIGGCLFAFIVSFDVFTISFMLKNVGTSTLPIQLFDYLRTNFTPEAAAV
STCSIILTLIVVVVCEKILGLRIHRF

Sequences:

>Translated_266_residues
MEGIKDMSKPFLTVYCLVIYAFLLAPILVVVGASFNAGAFLTFPPQGLSFRWYLVFFNNEVFMRAIRTSLWIATLTTIIS
GIIGTMAAMFYVQYAGKFKDTVRIAMLAPLLLPEVLTAISLLFFVYSIGIGTQTIVGLLLGHVLITLPFVFINVSASMES
YDPSWSLAAQSLGAGRFTRFRRIMLPLIKPGVIGGCLFAFIVSFDVFTISFMLKNVGTSTLPIQLFDYLRTNFTPEAAAV
STCSIILTLIVVVVCEKILGLRIHRF
>Mature_266_residues
MEGIKDMSKPFLTVYCLVIYAFLLAPILVVVGASFNAGAFLTFPPQGLSFRWYLVFFNNEVFMRAIRTSLWIATLTTIIS
GIIGTMAAMFYVQYAGKFKDTVRIAMLAPLLLPEVLTAISLLFFVYSIGIGTQTIVGLLLGHVLITLPFVFINVSASMES
YDPSWSLAAQSLGAGRFTRFRRIMLPLIKPGVIGGCLFAFIVSFDVFTISFMLKNVGTSTLPIQLFDYLRTNFTPEAAAV
STCSIILTLIVVVVCEKILGLRIHRF

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=242, Percent_Identity=30.1652892561983, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787081, Length=249, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787714, Length=244, Percent_Identity=31.5573770491803, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29390; Mature: 29390

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGIKDMSKPFLTVYCLVIYAFLLAPILVVVGASFNAGAFLTFPPQGLSFRWYLVFFNNE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCH
VFMRAIRTSLWIATLTTIISGIIGTMAAMFYVQYAGKFKDTVRIAMLAPLLLPEVLTAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFFVYSIGIGTQTIVGLLLGHVLITLPFVFINVSASMESYDPSWSLAAQSLGAGRFTRF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCHHHHHHHHCCHHHHHH
RRIMLPLIKPGVIGGCLFAFIVSFDVFTISFMLKNVGTSTLPIQLFDYLRTNFTPEAAAV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH
STCSIILTLIVVVVCEKILGLRIHRF
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEGIKDMSKPFLTVYCLVIYAFLLAPILVVVGASFNAGAFLTFPPQGLSFRWYLVFFNNE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCH
VFMRAIRTSLWIATLTTIISGIIGTMAAMFYVQYAGKFKDTVRIAMLAPLLLPEVLTAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFFVYSIGIGTQTIVGLLLGHVLITLPFVFINVSASMESYDPSWSLAAQSLGAGRFTRF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCHHHHHHHHCCHHHHHH
RRIMLPLIKPGVIGGCLFAFIVSFDVFTISFMLKNVGTSTLPIQLFDYLRTNFTPEAAAV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH
STCSIILTLIVVVVCEKILGLRIHRF
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]