| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is livF [H]
Identifier: 116248773
GI number: 116248773
Start: 93144
End: 93863
Strand: Reverse
Name: livF [H]
Synonym: pRL120097
Alternate gene names: 116248773
Gene position: 93863-93144 (Counterclockwise)
Preceding gene: 116248774
Following gene: 116248772
Centisome position: 10.79
GC content: 63.33
Gene sequence:
>720_bases ATGGCGCTGCTCGAAACCAGAGGCTTGACCGCTTCCTACGGCGACTTCCAGGCGCTATTCGGCGTCGATATCATGGTCGG CTCCGGCGAGACCATCGCCATCATCGGCGCCAATGGGGCCGGCAAGACGACGCTAATGCGCTCGATCTCCGGCGTGCTCG CCAATGCGCCGGCATCGATCCTTTACCGCGACGAGCCGATCGGGGCGCTGCCGGCGCCGGACATTCTGGCGCGCGGCATT GCCATGGTGCCGGAAGGGCGAAAACTCTTTCCGTCGCTGAATGTCGAGGAAAACCTGCTGGTCGGCAATTATGGCCGCAA GATCGATGGCCCGTGGACGCTCGAAAGCATCTTCGCGCTGTTCCCGATCCTGAAGGAGCGGCGCAACAACCCGGCCACAG CACTTTCCGGCGGGCAGCAGCAGATGGTGGCGATCGGCCGCGGGCTGATGTCCAATCCTGCGCTACTGCTCTGCGACGAG ATCAGCCTTGGCCTTGCGCCTGTCGTGGTCCGCGATATCTACGGCGCCTTCCCGCTCATCCGCGAGACCGGCGCTTCGAT CGTCATCGTCGAGCAGGATATTGCTCAGGCGCTGAAGGTGGCCGACCGCGTCTACTGCATGATGGAGGGGCGAGTGACGC TGTCGGGCCGCACTGCCGATCTTAGCCGCGCCGACATCCACAAGGCCTATTTCGGGACCGATCATCATGAACTGGCTTGA
Upstream 100 bases:
>100_bases TGCTGGTGCTGCATTTCGGCAAAGTCATCGGCATCGGCAAGCCGGAGGACATTATGGCGTCGCGCGATGTGCGTGAAATC TATCTGGGGATCGAGATCTG
Downstream 100 bases:
>100_bases TACCATTCTCCAGGGCGTGCTGCTCGGCGGGCTCTATGCGCTGTTTGCGGCGGGCTTGAGCCTCGTCTTCGGCATCATGC GGCTGGTCAACCTCGCCCAT
Product: putative ATP-binding component of ABC transporter
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MALLETRGLTASYGDFQALFGVDIMVGSGETIAIIGANGAGKTTLMRSISGVLANAPASILYRDEPIGALPAPDILARGI AMVPEGRKLFPSLNVEENLLVGNYGRKIDGPWTLESIFALFPILKERRNNPATALSGGQQQMVAIGRGLMSNPALLLCDE ISLGLAPVVVRDIYGAFPLIRETGASIVIVEQDIAQALKVADRVYCMMEGRVTLSGRTADLSRADIHKAYFGTDHHELA
Sequences:
>Translated_239_residues MALLETRGLTASYGDFQALFGVDIMVGSGETIAIIGANGAGKTTLMRSISGVLANAPASILYRDEPIGALPAPDILARGI AMVPEGRKLFPSLNVEENLLVGNYGRKIDGPWTLESIFALFPILKERRNNPATALSGGQQQMVAIGRGLMSNPALLLCDE ISLGLAPVVVRDIYGAFPLIRETGASIVIVEQDIAQALKVADRVYCMMEGRVTLSGRTADLSRADIHKAYFGTDHHELA >Mature_238_residues ALLETRGLTASYGDFQALFGVDIMVGSGETIAIIGANGAGKTTLMRSISGVLANAPASILYRDEPIGALPAPDILARGIA MVPEGRKLFPSLNVEENLLVGNYGRKIDGPWTLESIFALFPILKERRNNPATALSGGQQQMVAIGRGLMSNPALLLCDEI SLGLAPVVVRDIYGAFPLIRETGASIVIVEQDIAQALKVADRVYCMMEGRVTLSGRTADLSRADIHKAYFGTDHHELA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI153792144, Length=217, Percent_Identity=27.1889400921659, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI105990541, Length=200, Percent_Identity=25, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI27477115, Length=222, Percent_Identity=26.1261261261261, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082268, Length=233, Percent_Identity=42.9184549356223, Blast_Score=181, Evalue=3e-47, Organism=Escherichia coli, GI1787792, Length=231, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=29.2887029288703, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=30.1369863013699, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=26.3779527559055, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=31.5555555555556, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787370, Length=220, Percent_Identity=29.0909090909091, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI87081791, Length=223, Percent_Identity=29.1479820627803, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=30.7017543859649, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1790467, Length=235, Percent_Identity=27.6595744680851, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790525, Length=236, Percent_Identity=27.5423728813559, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789991, Length=228, Percent_Identity=26.3157894736842, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87082267, Length=218, Percent_Identity=32.1100917431193, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1790190, Length=204, Percent_Identity=28.4313725490196, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI48995001, Length=244, Percent_Identity=26.6393442622951, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788472, Length=215, Percent_Identity=26.9767441860465, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790544, Length=251, Percent_Identity=26.6932270916335, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787164, Length=220, Percent_Identity=30.4545454545455, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=29.3333333333333, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788450, Length=240, Percent_Identity=28.75, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790739, Length=245, Percent_Identity=27.3469387755102, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=28.1818181818182, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=29.8319327731092, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87081834, Length=223, Percent_Identity=29.5964125560538, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786563, Length=217, Percent_Identity=30.8755760368664, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1786398, Length=203, Percent_Identity=29.5566502463054, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1788897, Length=221, Percent_Identity=28.5067873303167, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=26.7543859649123, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=28.3720930232558, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790162, Length=240, Percent_Identity=25.8333333333333, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788761, Length=216, Percent_Identity=28.2407407407407, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786319, Length=199, Percent_Identity=27.6381909547739, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=24.6511627906977, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786803, Length=245, Percent_Identity=24.8979591836735, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1786703, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081782, Length=227, Percent_Identity=26.8722466960352, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=30.6306306306306, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789032, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787112, Length=211, Percent_Identity=28.436018957346, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI48994943, Length=223, Percent_Identity=25.1121076233184, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789962, Length=220, Percent_Identity=28.1818181818182, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788644, Length=225, Percent_Identity=27.5555555555556, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787500, Length=222, Percent_Identity=25.6756756756757, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193209708, Length=243, Percent_Identity=27.5720164609054, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533608, Length=217, Percent_Identity=24.8847926267281, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71984940, Length=216, Percent_Identity=27.3148148148148, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI19920532, Length=212, Percent_Identity=27.3584905660377, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580930, Length=212, Percent_Identity=27.3584905660377, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=235, Percent_Identity=25.1063829787234, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221512771, Length=231, Percent_Identity=23.8095238095238, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25479; Mature: 25348
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLETRGLTASYGDFQALFGVDIMVGSGETIAIIGANGAGKTTLMRSISGVLANAPASI CCEECCCCCCCCCCCHHEEHEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEE LYRDEPIGALPAPDILARGIAMVPEGRKLFPSLNVEENLLVGNYGRKIDGPWTLESIFAL EEECCCCCCCCCHHHHHCCEEECCCCCEECCCCCCCCCEEECCCCCCCCCCCCHHHHHHH FPILKERRNNPATALSGGQQQMVAIGRGLMSNPALLLCDEISLGLAPVVVRDIYGAFPLI HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH RETGASIVIVEQDIAQALKVADRVYCMMEGRVTLSGRTADLSRADIHKAYFGTDHHELA HHCCCEEEEECHHHHHHHHHHHHEEEEEECEEEECCCCCCCCHHHHHHHHCCCCHHCCC >Mature Secondary Structure ALLETRGLTASYGDFQALFGVDIMVGSGETIAIIGANGAGKTTLMRSISGVLANAPASI CEECCCCCCCCCCCHHEEHEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEE LYRDEPIGALPAPDILARGIAMVPEGRKLFPSLNVEENLLVGNYGRKIDGPWTLESIFAL EEECCCCCCCCCHHHHHCCEEECCCCCEECCCCCCCCCEEECCCCCCCCCCCCHHHHHHH FPILKERRNNPATALSGGQQQMVAIGRGLMSNPALLLCDEISLGLAPVVVRDIYGAFPLI HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH RETGASIVIVEQDIAQALKVADRVYCMMEGRVTLSGRTADLSRADIHKAYFGTDHHELA HHCCCEEEEECHHHHHHHHHHHHEEEEEECEEEECCCCCCCCHHHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]