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The map label for this gene is ycjN [C]

Identifier: 116248696

GI number: 116248696

Start: 18748

End: 19995

Strand: Reverse

Name: ycjN [C]

Synonym: pRL120020

Alternate gene names: 116248696

Gene position: 19995-18748 (Counterclockwise)

Preceding gene: 116248697

Following gene: 116248695

Centisome position: 2.3

GC content: 59.62

Gene sequence:

>1248_bases
ATGAATATCAGAAAATTCGGCGTGACGATGCGGGCTGCCGTGGCGGTATGGGCGCTCTGCGCCACATCGGCGTTTGCCGA
CACCACCATCGAGTTCATTCAATGGTGGGAACCCGAAATGCCGTCGGGCGCTCTGCGCGGCATCATGAACGATTTCGAAG
CCAAAAACCCCGGCATCAAGGTGACGCTGGTCAGCGGCCCCTATGCCACGACGCGCGACCAGATCGTCGTCGGCGCCGCC
TCCGGAACGCTCAGCGACGTGGTGGGCCTCGATGGTGCCTGGGTAAACGGGCTCTCCAAGCAGGGCGCGATCGCCTCCAT
GGACGAACTGATGGAGAAGGCGAAATACGACAAGAGCCAGATCACCGATATCGTCAAGGTCGATGGCAAGAGCGTGATGT
TCCCGCTGGCATCCTTCGTCTACCCGGTCTTCGTGAACCTCGATATCGCCAAGGCCGCCGGCGTCGACAAGCTGCCGGCC
ACGCGCACGGAATTTGCCGAAGCAGCGAAGAAGATGACCGACGCCTCGAAGAACCAGTACGGCTGGGTCCTGCCGCTATC
GCTGCAGTCTCCGAGCGGAATCCAGAACGACGTCATGTCCTGGGTCTGGGCCTCCGGTGCCTCGATGCTGAAGGACGGCA
AGCCTGACCTCGAAAATGACGCCGTCGTCGGCACGCTCGACTATATCGCTTCCCTCAACAAGGAAGGGGTTATTTCTCCC
GGCATTTTTGCCAAGAAGGAACAGGACAAGGTAGAGGAATTCGTCAATGGCCGCGTCGGCATGATGGTCGACTCCCTCGC
CCATGTGAACCTGATCCGCGAGCGCAATCCGAAGCTCAATTTCGGCATCTCCGCTTTGCCCGCCACTGACGGCTACACCG
GCAAGCGCGGCATGCCTTATGCATCCTGGGGTATCGGCATCAGCGAAGGCAGCCAGCACAAGGAAGAAGCCTGGAAGCTG
GTCGAATACCTGATGAGCCCTGACGTCAATGGCCGTCTCGTCTCGATTGCCAATGCCTTCCCCGGCAACGTCCATGCCAA
GCCGGACTTCGTGGCCTCGGACCCGATCTTCGCGGAAGCCTTCAAAATCTTCCAGAGCGGTTATCCTGCGAACGAATTCG
TCGGCCTTCCGGTTGCCGAAGAGCTGATGCGCGACATGAACGTCGAAGTTCAGAAGATGTTCGACGGCGGGCAGTCAGCC
AAGGAGGCAGCTGCCAATACCGAGAAGGCTTGGCTGGCGAAGTTCTAA

Upstream 100 bases:

>100_bases
CCGATCGCAGTTCTTCATTGACAGATGGGGGCTTCAGGGAACCTACTTTGCCTACGATCTTGAGGAGGATCGATTAACTG
ACAATCTTTGGGAGGCACAA

Downstream 100 bases:

>100_bases
GCACGTCGCTTTCACGGATCACCGGCAGCGCAACCATGCGCTGCCGGTGCAAGTCGTCAAATTTCGGCAGAATAGAAAGT
CACAGCTCATGAATCATTCG

Product: putative substrate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MNIRKFGVTMRAAVAVWALCATSAFADTTIEFIQWWEPEMPSGALRGIMNDFEAKNPGIKVTLVSGPYATTRDQIVVGAA
SGTLSDVVGLDGAWVNGLSKQGAIASMDELMEKAKYDKSQITDIVKVDGKSVMFPLASFVYPVFVNLDIAKAAGVDKLPA
TRTEFAEAAKKMTDASKNQYGWVLPLSLQSPSGIQNDVMSWVWASGASMLKDGKPDLENDAVVGTLDYIASLNKEGVISP
GIFAKKEQDKVEEFVNGRVGMMVDSLAHVNLIRERNPKLNFGISALPATDGYTGKRGMPYASWGIGISEGSQHKEEAWKL
VEYLMSPDVNGRLVSIANAFPGNVHAKPDFVASDPIFAEAFKIFQSGYPANEFVGLPVAEELMRDMNVEVQKMFDGGQSA
KEAAANTEKAWLAKF

Sequences:

>Translated_415_residues
MNIRKFGVTMRAAVAVWALCATSAFADTTIEFIQWWEPEMPSGALRGIMNDFEAKNPGIKVTLVSGPYATTRDQIVVGAA
SGTLSDVVGLDGAWVNGLSKQGAIASMDELMEKAKYDKSQITDIVKVDGKSVMFPLASFVYPVFVNLDIAKAAGVDKLPA
TRTEFAEAAKKMTDASKNQYGWVLPLSLQSPSGIQNDVMSWVWASGASMLKDGKPDLENDAVVGTLDYIASLNKEGVISP
GIFAKKEQDKVEEFVNGRVGMMVDSLAHVNLIRERNPKLNFGISALPATDGYTGKRGMPYASWGIGISEGSQHKEEAWKL
VEYLMSPDVNGRLVSIANAFPGNVHAKPDFVASDPIFAEAFKIFQSGYPANEFVGLPVAEELMRDMNVEVQKMFDGGQSA
KEAAANTEKAWLAKF
>Mature_415_residues
MNIRKFGVTMRAAVAVWALCATSAFADTTIEFIQWWEPEMPSGALRGIMNDFEAKNPGIKVTLVSGPYATTRDQIVVGAA
SGTLSDVVGLDGAWVNGLSKQGAIASMDELMEKAKYDKSQITDIVKVDGKSVMFPLASFVYPVFVNLDIAKAAGVDKLPA
TRTEFAEAAKKMTDASKNQYGWVLPLSLQSPSGIQNDVMSWVWASGASMLKDGKPDLENDAVVGTLDYIASLNKEGVISP
GIFAKKEQDKVEEFVNGRVGMMVDSLAHVNLIRERNPKLNFGISALPATDGYTGKRGMPYASWGIGISEGSQHKEEAWKL
VEYLMSPDVNGRLVSIANAFPGNVHAKPDFVASDPIFAEAFKIFQSGYPANEFVGLPVAEELMRDMNVEVQKMFDGGQSA
KEAAANTEKAWLAKF

Specific function: Probably part of an ABC transporter complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44929; Mature: 44929

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRKFGVTMRAAVAVWALCATSAFADTTIEFIQWWEPEMPSGALRGIMNDFEAKNPGIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEE
VTLVSGPYATTRDQIVVGAASGTLSDVVGLDGAWVNGLSKQGAIASMDELMEKAKYDKSQ
EEEECCCCCCCCCCEEEEECCCCHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHCCHHH
ITDIVKVDGKSVMFPLASFVYPVFVNLDIAKAAGVDKLPATRTEFAEAAKKMTDASKNQY
HHHHHHCCCCHHHHHHHHHHHHHHEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
GWVLPLSLQSPSGIQNDVMSWVWASGASMLKDGKPDLENDAVVGTLDYIASLNKEGVISP
CEEEEEECCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEHHHHHHHCCCCCCCCC
GIFAKKEQDKVEEFVNGRVGMMVDSLAHVNLIRERNPKLNFGISALPATDGYTGKRGMPY
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC
ASWGIGISEGSQHKEEAWKLVEYLMSPDVNGRLVSIANAFPGNVHAKPDFVASDPIFAEA
HHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH
FKIFQSGYPANEFVGLPVAEELMRDMNVEVQKMFDGGQSAKEAAANTEKAWLAKF
HHHHHCCCCHHHEECCCHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCHHHHCCC
>Mature Secondary Structure
MNIRKFGVTMRAAVAVWALCATSAFADTTIEFIQWWEPEMPSGALRGIMNDFEAKNPGIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEE
VTLVSGPYATTRDQIVVGAASGTLSDVVGLDGAWVNGLSKQGAIASMDELMEKAKYDKSQ
EEEECCCCCCCCCCEEEEECCCCHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHCCHHH
ITDIVKVDGKSVMFPLASFVYPVFVNLDIAKAAGVDKLPATRTEFAEAAKKMTDASKNQY
HHHHHHCCCCHHHHHHHHHHHHHHEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
GWVLPLSLQSPSGIQNDVMSWVWASGASMLKDGKPDLENDAVVGTLDYIASLNKEGVISP
CEEEEEECCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEHHHHHHHCCCCCCCCC
GIFAKKEQDKVEEFVNGRVGMMVDSLAHVNLIRERNPKLNFGISALPATDGYTGKRGMPY
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC
ASWGIGISEGSQHKEEAWKLVEYLMSPDVNGRLVSIANAFPGNVHAKPDFVASDPIFAEA
HHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH
FKIFQSGYPANEFVGLPVAEELMRDMNVEVQKMFDGGQSAKEAAANTEKAWLAKF
HHHHHCCCCHHHEECCCHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA