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The map label for this gene is ydhC [H]

Identifier: 116248681

GI number: 116248681

Start: 4665

End: 5342

Strand: Direct

Name: ydhC [H]

Synonym: pRL120005

Alternate gene names: 116248681

Gene position: 4665-5342 (Clockwise)

Preceding gene: 116248680

Following gene: 116248682

Centisome position: 0.54

GC content: 59.14

Gene sequence:

>678_bases
ATGTTTCTGGGAGAGGCGATGGACGGAACCGACGAGCAGCCGACACTGCGGGAAAAGGCGTATGAGAGCTTCACACGCCA
CCTTCTTGCGCGTGACGTGCGCCCCGGCCAGTTCGTTTCGCAGCGCCGCCTCGTCGAGCTGACAGGGCTGACGCTTGGCG
CCATCCGCGAGCTTATCCCCCGGCTGGAAGCCGAAGGGCTGATCAAGACGGTGCCCCAGCGGGGGTTGCAGATTGCGCAT
ATCGACCTGAACCTTATTCGCGAGGCGTTCCAGCTGCGCGTGTTCCTGGAGAAGGAAGCGGTCGCGCTTTTCACCCGCTC
TGCGTCTGACGAGACGGTCGCCGGGCTACTGAAGCAGCATCGGGATATTGCCGACGCCATTCGAAACGGCGATGGATCGC
ACGAATTGGAAGTGCACGCGCAGGCTGTCGATTGGGGCATGCACGATGCCTTTATCGATGCTTTGGGAAATACCATCATC
TCGAACGCCTACCGGGTGAACTCGATCAAGATGCGCCTGATCAGTCAGGACCGTTTTCGAATCGATGGTCACGTCGGACC
TGTCATGGTTGAGCACCTGAAGGTGCTCGAGGCGATCGAACGACGATCGGCTGAGGACGCCGTCAACAGCCTTGTCGCAC
ATATCAATCATGCAAGAGATCGTGCGCTCAGGATATAA

Upstream 100 bases:

>100_bases
GCGGTTCGCCCACCACTCGTTTCGATATCCGGCGAAGGGCAGGCGCAACTCGCTCTTGTGTTCGACACCCTTTTCCGCTC
GAAGGCGGCATAGGTCGGAG

Downstream 100 bases:

>100_bases
TCGGAAATAAACAGCCGGGGATGAGGAGATCGCCGGCAAAAGGAGGAGGAATCACATGTCATCGTTTTTGAACCCGACGA
GGCGCGGCTTTCTGGCGGGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MFLGEAMDGTDEQPTLREKAYESFTRHLLARDVRPGQFVSQRRLVELTGLTLGAIRELIPRLEAEGLIKTVPQRGLQIAH
IDLNLIREAFQLRVFLEKEAVALFTRSASDETVAGLLKQHRDIADAIRNGDGSHELEVHAQAVDWGMHDAFIDALGNTII
SNAYRVNSIKMRLISQDRFRIDGHVGPVMVEHLKVLEAIERRSAEDAVNSLVAHINHARDRALRI

Sequences:

>Translated_225_residues
MFLGEAMDGTDEQPTLREKAYESFTRHLLARDVRPGQFVSQRRLVELTGLTLGAIRELIPRLEAEGLIKTVPQRGLQIAH
IDLNLIREAFQLRVFLEKEAVALFTRSASDETVAGLLKQHRDIADAIRNGDGSHELEVHAQAVDWGMHDAFIDALGNTII
SNAYRVNSIKMRLISQDRFRIDGHVGPVMVEHLKVLEAIERRSAEDAVNSLVAHINHARDRALRI
>Mature_225_residues
MFLGEAMDGTDEQPTLREKAYESFTRHLLARDVRPGQFVSQRRLVELTGLTLGAIRELIPRLEAEGLIKTVPQRGLQIAH
IDLNLIREAFQLRVFLEKEAVALFTRSASDETVAGLLKQHRDIADAIRNGDGSHELEVHAQAVDWGMHDAFIDALGNTII
SNAYRVNSIKMRLISQDRFRIDGHVGPVMVEHLKVLEAIERRSAEDAVNSLVAHINHARDRALRI

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25322; Mature: 25322

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLGEAMDGTDEQPTLREKAYESFTRHLLARDVRPGQFVSQRRLVELTGLTLGAIRELIP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
RLEAEGLIKTVPQRGLQIAHIDLNLIREAFQLRVFLEKEAVALFTRSASDETVAGLLKQH
HHCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDIADAIRNGDGSHELEVHAQAVDWGMHDAFIDALGNTIISNAYRVNSIKMRLISQDRFR
HHHHHHHHCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHEEECCCCEE
IDGHVGPVMVEHLKVLEAIERRSAEDAVNSLVAHINHARDRALRI
ECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFLGEAMDGTDEQPTLREKAYESFTRHLLARDVRPGQFVSQRRLVELTGLTLGAIRELIP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
RLEAEGLIKTVPQRGLQIAHIDLNLIREAFQLRVFLEKEAVALFTRSASDETVAGLLKQH
HHCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDIADAIRNGDGSHELEVHAQAVDWGMHDAFIDALGNTIISNAYRVNSIKMRLISQDRFR
HHHHHHHHCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHEEECCCCEE
IDGHVGPVMVEHLKVLEAIERRSAEDAVNSLVAHINHARDRALRI
ECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]