Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115353195

Identifier: 115353195

GI number: 115353195

Start: 3461455

End: 3462246

Strand: Direct

Name: 115353195

Synonym: Bamb_3144

Alternate gene names: NA

Gene position: 3461455-3462246 (Clockwise)

Preceding gene: 115353194

Following gene: 115353196

Centisome position: 97.33

GC content: 68.31

Gene sequence:

>792_bases
TTGAGCGCACGCCGCCTGCCCAAGCCTCCCGACCTGCCGGCGTCGCTGCGACGCCGGCGCATCTCCCGCAGCCGGCCGCG
CGCCGGCACGCCCGTCTGGCTGTTCGATCTCGACAACACGCTGCACCACGCATCGCACGCGATCTTTCCGGAGATCAACC
GTGCGATGACGCAGTACATCATCGACACGCTCCAAGTCGGGCGTGCCGAGGCCGACCGCCTGCGCACCGGCTACACGCAG
CGCTACGGCGCCGCGCTCCTCGGCCTCACGCGCCATCATCCGATCGATCCGCACGACTTCCTGCGGGTCGTCCACACGTT
TGCCGACCTGCCCGCGATGCTGCGCGCCGAGCGCGGCCTCGCGCGCATCATCGCCGCGCTGCCGGGTCGCAAGTTCGTGC
TGACCAACGCGCCGGAGAACTACGCGCGCGCGGTACTGCGCGAGCTGCGCATCGAGCGGCTGTTCGAACGCGTGATCGCG
ATCGAGCACATGCGCGACCGGCGCACCTGGCGCGCGAAGCCCGACCACACGATGCTGCGCCGGGCCTTGCGTGCCGCGCA
CGCGCGGCTGGCCGACGCGATCCTCGTTGAAGATACCCGCAGCCATCTGAAACGCTACAAGCGGCTCGGCATCGGTACCG
TATGGATCACCGGCCACCTGCCGGGCCATCTGCCGAGCATCGGCCGTCCACATTATGTCGACCAGCGCATTCGTTCGTTA
AAATCGCTCCGACTGGGCACACGATCGGGGCGACAGAAATGCAGCCGACTTACCCGCAGGACCAAGCCGTAA

Upstream 100 bases:

>100_bases
GCGGCGTGAAGTCGGTGCACATCGTCGATGGCCGGATCGAGCACTCGGTGCTGCTGGAAATCCTGACCGAGCAGCCGTTC
GGCACGATGATCCGCTCGCA

Downstream 100 bases:

>100_bases
AGGAAGACCAGGCCACGCCGTCCCGCCCGCGCCCGAAGCCGGGCGAGCGGCGCGTGATGATCCTGCAGACGCTCGCCGCG
ATGCTCGAGGTGCCGAAGCC

Product: pyrimidine 5'-nucleotidase

Products: NA

Alternate protein names: Hydrolase; HAD-Superfamily Hydrolase; HAD Family Pyrimidine 5-Nucleotidase; HAD Superfamily Hydrolase; HAD Family Hydrolase; Phosphatase; Hydrolase Protein; HAD Superfamily Protein; Haloacid Dehalogenase Superfamily Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; Phosphoglycolate Phosphatase; Hydrolase Ripening-Related Protein-Like; Hydrolase Of HAD Superfamily

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYIIDTLQVGRAEADRLRTGYTQ
RYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGLARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIA
IEHMRDRRTWRAKPDHTMLRRALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL
KSLRLGTRSGRQKCSRLTRRTKP

Sequences:

>Translated_263_residues
MSARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYIIDTLQVGRAEADRLRTGYTQ
RYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGLARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIA
IEHMRDRRTWRAKPDHTMLRRALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL
KSLRLGTRSGRQKCSRLTRRTKP
>Mature_262_residues
SARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYIIDTLQVGRAEADRLRTGYTQR
YGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGLARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIAI
EHMRDRRTWRAKPDHTMLRRALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSLK
SLRLGTRSGRQKCSRLTRRTKP

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321214, Length=202, Percent_Identity=24.2574257425743, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30396; Mature: 30265

Theoretical pI: Translated: 12.21; Mature: 12.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYI
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
IDTLQVGRAEADRLRTGYTQRYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGL
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIAIEHMRDRRTWRAKPDHTMLR
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
RALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
KSLRLGTRSGRQKCSRLTRRTKP
HHHHHCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SARRLPKPPDLPASLRRRRISRSRPRAGTPVWLFDLDNTLHHASHAIFPEINRAMTQYI
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
IDTLQVGRAEADRLRTGYTQRYGAALLGLTRHHPIDPHDFLRVVHTFADLPAMLRAERGL
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARIIAALPGRKFVLTNAPENYARAVLRELRIERLFERVIAIEHMRDRRTWRAKPDHTMLR
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
RALRAAHARLADAILVEDTRSHLKRYKRLGIGTVWITGHLPGHLPSIGRPHYVDQRIRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
KSLRLGTRSGRQKCSRLTRRTKP
HHHHHCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA