| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115353030
Identifier: 115353030
GI number: 115353030
Start: 3286654
End: 3287910
Strand: Direct
Name: 115353030
Synonym: Bamb_2979
Alternate gene names: NA
Gene position: 3286654-3287910 (Clockwise)
Preceding gene: 115353029
Following gene: 115353031
Centisome position: 92.41
GC content: 69.53
Gene sequence:
>1257_bases ATGGCGTTCAGCAAAGTATTGGTGGGATGGATGGCGGCCTGTGCGCTGTCGGCCGCTCAGGCCGGTGCGCTGCCGAACGC AAATACCGGCGCGGCCGCAGCCGCCGGCTCGCTCGCCCATGCCGAGCGCTTCGATTACGGCGATTCGCGCCTCCCGCAAG TTGCCGCGAACCTCAACGAACAAGTCATCAGCATTCCGGCCGATGCGTCGGGCACCGTGATGCTCGAGGCCACGCTGTTC AAGCCGGACGGCCCCGGCCCGTTCCCGCTCGTCGTCTTCAACCACGGCAAGAACACCGGCGATCTGCATCTGCAGCCGCG CAGCCGGCCGCTCGCGTTCGCCCGTGAATTCGTGCGCCGCGGCTATGCGGTGATCGCGCCGAACCGCCAAGGCTTCGCCG GGTCGGGCGGCACGTACCAGCAGGAAGGCTGCAACGTCCGCAAGAACGGCCTCGCGCAGGCCGCCGACGTCGCCGCGACG GTCCGCTACATGTCGCGTCAGTCGTACATCGATGCGTCGCGCATCGTCGTCGCCGGCACGTCGCATGGCGGCCTCGCGTC GGTCGCGTACGGCACCGAAGCGGCGCCCGGCGTGCGCGGCATCATCAACTTCTCCGGCGGGCTGCGCCAGGATCTCTGCG ACGGCTGGCAGCGCAATCTCGTCGAAGCATTCGACCAGTACGGCGCGCATACGGCCGTGCGCTCGCTGTGGCTGTACGGC GACAACGATTCGGTGTGGACGCCCGCGCTCGTCGCGCAGATGCACGACGCGTACGTGTCGCACGGCACGCAGGCGCAGTT CATCGATTTCGGCCGCTACAAGGACGACGCGCACCGGCTGATCGTCGATCGCGACGGCGTGCCCGTGTGGTGGCCGGCCG TGCATGCGTTCCTCGCGGACCTGAGCCTGCCGACCTCGGTGCGCTATGCGGTCGCGAACCCGCACGAGCCGAATGCGACC GGCTACGCGTCGATCGATGCGGTCGAGGCGGTGCCGTTCCTCGACGCGGCCGGCCGCGAAGGCTATCGCCGCTTCCTGAG CCAGCATCCGAGCCGCGCGTTCGCGGTGTCCGCCGAAGGCGCGTGGTCGTGGGCCGAAGGCGGCGACGACCCGATGGCGC TCGCGCTCGACAACTGCACGAAGCAGGGTGCGGGTGCGTGCCGGCTGTATGCGGTGAACGACCGCGTCGTGTGGAACGGC GCGACGCAGACGGCCGACAACGGCGACGCCGATACGCACGCGCTGGCTTCGCGCTGA
Upstream 100 bases:
>100_bases TGCCGTGTCAGACGCCGGGTAATTCCCGCATTGCACAACCTGAATTTGTCGGGCTACGATGGCCCCTCGGATCGGTCATG TTGCATGGCAGGGCTTACGA
Downstream 100 bases:
>100_bases TCGCGGATGGCGGATGGCGACGCCCAGGATCGGGCGGTTTCGGCATCGTCTTCTTCGCTTCTGTCCCTGCTCCCGGTAAC TGAGCGCTCGCGCGGCGCGC
Product: dienelactone hydrolase and related enzyme-like protein
Products: NA
Alternate protein names: Signal Peptide Protein; Dipeptidyl Aminopeptidase/Acylaminoacyl-Peptidase; Dienelactone Hydrolase And Related S-Like Protein; Dienelactone Hydrolase-Like; Acylamino-Acid-Releasing; Acylaminoacyl-Peptidase; Dipeptidyl; Dienelactone Hydrolase And Related S Protein; Subfamily S9C Unassigned Peptidase; Dienelactone Hydrolase-Like Protein; Lipoprotein
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MAFSKVLVGWMAACALSAAQAGALPNANTGAAAAAGSLAHAERFDYGDSRLPQVAANLNEQVISIPADASGTVMLEATLF KPDGPGPFPLVVFNHGKNTGDLHLQPRSRPLAFAREFVRRGYAVIAPNRQGFAGSGGTYQQEGCNVRKNGLAQAADVAAT VRYMSRQSYIDASRIVVAGTSHGGLASVAYGTEAAPGVRGIINFSGGLRQDLCDGWQRNLVEAFDQYGAHTAVRSLWLYG DNDSVWTPALVAQMHDAYVSHGTQAQFIDFGRYKDDAHRLIVDRDGVPVWWPAVHAFLADLSLPTSVRYAVANPHEPNAT GYASIDAVEAVPFLDAAGREGYRRFLSQHPSRAFAVSAEGAWSWAEGGDDPMALALDNCTKQGAGACRLYAVNDRVVWNG ATQTADNGDADTHALASR
Sequences:
>Translated_418_residues MAFSKVLVGWMAACALSAAQAGALPNANTGAAAAAGSLAHAERFDYGDSRLPQVAANLNEQVISIPADASGTVMLEATLF KPDGPGPFPLVVFNHGKNTGDLHLQPRSRPLAFAREFVRRGYAVIAPNRQGFAGSGGTYQQEGCNVRKNGLAQAADVAAT VRYMSRQSYIDASRIVVAGTSHGGLASVAYGTEAAPGVRGIINFSGGLRQDLCDGWQRNLVEAFDQYGAHTAVRSLWLYG DNDSVWTPALVAQMHDAYVSHGTQAQFIDFGRYKDDAHRLIVDRDGVPVWWPAVHAFLADLSLPTSVRYAVANPHEPNAT GYASIDAVEAVPFLDAAGREGYRRFLSQHPSRAFAVSAEGAWSWAEGGDDPMALALDNCTKQGAGACRLYAVNDRVVWNG ATQTADNGDADTHALASR >Mature_417_residues AFSKVLVGWMAACALSAAQAGALPNANTGAAAAAGSLAHAERFDYGDSRLPQVAANLNEQVISIPADASGTVMLEATLFK PDGPGPFPLVVFNHGKNTGDLHLQPRSRPLAFAREFVRRGYAVIAPNRQGFAGSGGTYQQEGCNVRKNGLAQAADVAATV RYMSRQSYIDASRIVVAGTSHGGLASVAYGTEAAPGVRGIINFSGGLRQDLCDGWQRNLVEAFDQYGAHTAVRSLWLYGD NDSVWTPALVAQMHDAYVSHGTQAQFIDFGRYKDDAHRLIVDRDGVPVWWPAVHAFLADLSLPTSVRYAVANPHEPNATG YASIDAVEAVPFLDAAGREGYRRFLSQHPSRAFAVSAEGAWSWAEGGDDPMALALDNCTKQGAGACRLYAVNDRVVWNGA TQTADNGDADTHALASR
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44422; Mature: 44291
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFSKVLVGWMAACALSAAQAGALPNANTGAAAAAGSLAHAERFDYGDSRLPQVAANLNE CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC QVISIPADASGTVMLEATLFKPDGPGPFPLVVFNHGKNTGDLHLQPRSRPLAFAREFVRR EEEEECCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHHC GYAVIAPNRQGFAGSGGTYQQEGCNVRKNGLAQAADVAATVRYMSRQSYIDASRIVVAGT CEEEECCCCCCCCCCCCCCHHCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC SHGGLASVAYGTEAAPGVRGIINFSGGLRQDLCDGWQRNLVEAFDQYGAHTAVRSLWLYG CCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHEEEEEC DNDSVWTPALVAQMHDAYVSHGTQAQFIDFGRYKDDAHRLIVDRDGVPVWWPAVHAFLAD CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHH LSLPTSVRYAVANPHEPNATGYASIDAVEAVPFLDAAGREGYRRFLSQHPSRAFAVSAEG CCCCCCEEEEECCCCCCCCCCCEECCHHHHCCCHHHCCHHHHHHHHHHCCCCEEEEECCC AWSWAEGGDDPMALALDNCTKQGAGACRLYAVNDRVVWNGATQTADNGDADTHALASR CEECCCCCCCCEEEEECHHCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCHHHHCCC >Mature Secondary Structure AFSKVLVGWMAACALSAAQAGALPNANTGAAAAAGSLAHAERFDYGDSRLPQVAANLNE CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC QVISIPADASGTVMLEATLFKPDGPGPFPLVVFNHGKNTGDLHLQPRSRPLAFAREFVRR EEEEECCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHHC GYAVIAPNRQGFAGSGGTYQQEGCNVRKNGLAQAADVAATVRYMSRQSYIDASRIVVAGT CEEEECCCCCCCCCCCCCCHHCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC SHGGLASVAYGTEAAPGVRGIINFSGGLRQDLCDGWQRNLVEAFDQYGAHTAVRSLWLYG CCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHEEEEEC DNDSVWTPALVAQMHDAYVSHGTQAQFIDFGRYKDDAHRLIVDRDGVPVWWPAVHAFLAD CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHH LSLPTSVRYAVANPHEPNATGYASIDAVEAVPFLDAAGREGYRRFLSQHPSRAFAVSAEG CCCCCCEEEEECCCCCCCCCCCEECCHHHHCCCHHHCCHHHHHHHHHHCCCCEEEEECCC AWSWAEGGDDPMALALDNCTKQGAGACRLYAVNDRVVWNGATQTADNGDADTHALASR CEECCCCCCCCEEEEECHHCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA