| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115352899
Identifier: 115352899
GI number: 115352899
Start: 3143052
End: 3143666
Strand: Direct
Name: 115352899
Synonym: Bamb_2848
Alternate gene names: NA
Gene position: 3143052-3143666 (Clockwise)
Preceding gene: 115352898
Following gene: 115352900
Centisome position: 88.37
GC content: 65.85
Gene sequence:
>615_bases ATGAACACGCATTTCCGCTGGACCCAGTTGCTGCCGCTGATCGCGGTCGCCGCGCTCGCGGGCATCACGTGGTGGCTGCT GCAGGCGACGCTGCCGCCGCCCGGCGAAGGCGCCGCGCAGCCGAAGCGCCATACGCCCGACTATTTCGCGGACAACTTCT CGGTCACCGAGCTCGACCAGTCGGGCACGACCCAGTACCGGCTCACGGCCGCGAAGCTGGTCCACTATGAAGACACCGAC AACAGCGACCTGACCGCTCCGGCCATGCGCGCATTCCAGCCCGGCAAGCCGGTCGTCACGACCACCGCGAAGCGCGGCAC CGTCAACGGCGACGTGTCGATCGTCGACTTGTACGACGACGCGCGCATCCTGCGCGTGGCCGGCGGCGGCGATCCGCAGA TGCAGGCCGATTCCCAGCATTTCCGGATCTTGGTCAATGACGATGTGATCCAGACCGAAAAGCCGGTTAAACTTCAGCGC GGCCTGTCGCTCGTCAACGCGACCGACGGCATGAAGTACAACAACGTCACCCGGGTCATCGAGCTTTACGGCAACGTGCG CGGCACGATCGCCGCGGCGGACACGTCCGGCGGCTCGAAAGGTCAATCCAGGTGA
Upstream 100 bases:
>100_bases CCGCGGCGGCCACGGCGCGGTGCGTGAAGTGTGCGACGCAATCCTGCGCGCGCAGCGCCGCTACGACGCGCTGCTCGCGG CTGCCTGCGGAGCCTGACGG
Downstream 100 bases:
>100_bases CGCATCCCTCACGTGACTGCATGAACGAACCGTTCCCTCGACAGAATTCCGGCGGCGCTGCGCGCGCCGTCCGCGCCGCG CTCGCCGCGACGCTCGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Exported Protein
Number of amino acids: Translated: 204; Mature: 204
Protein sequence:
>204_residues MNTHFRWTQLLPLIAVAALAGITWWLLQATLPPPGEGAAQPKRHTPDYFADNFSVTELDQSGTTQYRLTAAKLVHYEDTD NSDLTAPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDDARILRVAGGGDPQMQADSQHFRILVNDDVIQTEKPVKLQR GLSLVNATDGMKYNNVTRVIELYGNVRGTIAAADTSGGSKGQSR
Sequences:
>Translated_204_residues MNTHFRWTQLLPLIAVAALAGITWWLLQATLPPPGEGAAQPKRHTPDYFADNFSVTELDQSGTTQYRLTAAKLVHYEDTD NSDLTAPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDDARILRVAGGGDPQMQADSQHFRILVNDDVIQTEKPVKLQR GLSLVNATDGMKYNNVTRVIELYGNVRGTIAAADTSGGSKGQSR >Mature_204_residues MNTHFRWTQLLPLIAVAALAGITWWLLQATLPPPGEGAAQPKRHTPDYFADNFSVTELDQSGTTQYRLTAAKLVHYEDTD NSDLTAPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDDARILRVAGGGDPQMQADSQHFRILVNDDVIQTEKPVKLQR GLSLVNATDGMKYNNVTRVIELYGNVRGTIAAADTSGGSKGQSR
Specific function: Unknown
COG id: COG3117
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22181; Mature: 22181
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTHFRWTQLLPLIAVAALAGITWWLLQATLPPPGEGAAQPKRHTPDYFADNFSVTELDQ CCCCCHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCCCCHHCCCCEEEEECC SGTTQYRLTAAKLVHYEDTDNSDLTAPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDD CCCCEEEEEEEEEEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEECC ARILRVAGGGDPQMQADSQHFRILVNDDVIQTEKPVKLQRGLSLVNATDGMKYNNVTRVI CEEEEEECCCCCCCCCCCCEEEEEECCCEECCCCCHHHHHCCEEEECCCCCEECHHHHHH ELYGNVRGTIAAADTSGGSKGQSR HHHCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure MNTHFRWTQLLPLIAVAALAGITWWLLQATLPPPGEGAAQPKRHTPDYFADNFSVTELDQ CCCCCHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCCCCHHCCCCEEEEECC SGTTQYRLTAAKLVHYEDTDNSDLTAPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDD CCCCEEEEEEEEEEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEECC ARILRVAGGGDPQMQADSQHFRILVNDDVIQTEKPVKLQRGLSLVNATDGMKYNNVTRVI CEEEEEECCCCCCCCCCCCEEEEEECCCEECCCCCHHHHHCCEEEECCCCCEECHHHHHH ELYGNVRGTIAAADTSGGSKGQSR HHHCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA