Click here to switch to the map view.

The map label for this gene is 115352843

Identifier: 115352843

GI number: 115352843

Start: 3080438

End: 3081718

Strand: Direct

Name: 115352843

Synonym: Bamb_2792

Alternate gene names: NA

Gene position: 3080438-3081718 (Clockwise)

Preceding gene: 115352839

Following gene: 115352844

Centisome position: 86.61

GC content: 68.54

Gene sequence:

>1281_bases
ATGAAAGTTACAAACTATCAGGAACCGACAATCAATCCGTTGGGCAAGGGCCTCGGCAACCTGCCGAGCGCGAGCGTGCC
GCTCGGCGACGCAACCCGCCTCGAGTGGAACCTGCTCGCGGAAGACGTCAGCCTGCCGGCCGCGGTGCTGTACGCGGATC
GCATCGAACACAATCTGAACTGGATGCAGGCGTTCGTCCAGCAGTACGGCGCCCAGTTCGCGCCGCACGGCAAGACGACG
ATGGCGCCGCAACTGTTCCGCCGCCAGCTCGCCGCCGGCGCATGGGGCATCACGCTCGCGACCGCGCACCAGACGCAGGC
CGCGTATCACGGCGGCGTGCGGCGCGTGCTGCTGGCGAATCAGCTGGTCGGCCGCCAGAACATGACGATCATCGCGGAGC
TGCTGTCCGACCCCGACTTCGAATTCTTCTGCCTCGTCGATTCGGCCGACGGCGTCGACCAGCTCGGCCGCTTCTTCGGC
GACGCGAAGAAAACGCTGAACGTGCTGCTCGAGCTCGGCGTGCCGGGCGGCCGCGCGGGCGTGCGCGATGCCGCGCAGCG
CAAGGCCGTGCTCGACGCGATCGCGCGCTATCCGGACACGCTGAAGCTGGCCGGCATCGAACTCTACGAAGGCGTGCTGA
AGGAGGAAGGCGAGATCCGCGCGTTCCTGCAGGACGCGGTCGCGCTCACGCGCGAGCTGGCCGAAGCCGGCCGTTTCGCG
CGCACGCCGGCGATCCTGTCGGGCGCCGGCTCGGCATGGTACGACGTGGTCGCGGAGGAATTCGCGAAGGCGTCCGACGC
CGGTTTCGCGGAAGTCGTGCTGCGTCCGGGCTGCTACCTGACGCACGACGTCGGCATCTACAAGAAGGCGCAGACCGACG
TGTTCGCGCGCAACCCGATCGCCCGCAGGATGGGTGAAGGGCTGCTGCCGGCACTGCAGCTGTGGGCGTACGTTCAGTCG
GTGCCGGAGCAGGATCGCGCGATCATCGCGCTCGGCAAGCGCGACGCGGCGTTCGACGCGGGCCTGCCCGAGCCGGCGCG
CCACTTCCGCCCGGGCCGCGACAGCGCGCCGCGCGACGTCGCCGCGAGCGAAGGCTGGGCCGTCACCGGGATGATGGACC
AGCACGCGTACCTGCAGATCCCGCCGGGCGCGGACGTGAAGGTCGGCGACATGGTCGCGTTCGACATTTCGCACCCGTGC
CTGACGTTCGACAAGTGGCGCCAGCTGCTCGTCCTCGATCCGCAATTCCGCGTGACGGAAGTCGTCGAAACCTTCTTCTG
A

Upstream 100 bases:

>100_bases
GCTTTATGTTACTAAATAACATCACCGCGCCGATGCTACTTTCTGTACCATCGGCATGTCAACTTCAGTGCAATGCATAG
CGATGATGGAGCGGGATGAC

Downstream 100 bases:

>100_bases
CGCCCCGCGCACGCCGCCCCGCCGCCCGCGCGGGGCGGCCGTCACGCGCGCTTCAATCTGCCGGAGTACACTGCGCTTTC
GTCCTCGGGCCCGCTTCGCC

Product: amino acid aldolase or racemase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MKVTNYQEPTINPLGKGLGNLPSASVPLGDATRLEWNLLAEDVSLPAAVLYADRIEHNLNWMQAFVQQYGAQFAPHGKTT
MAPQLFRRQLAAGAWGITLATAHQTQAAYHGGVRRVLLANQLVGRQNMTIIAELLSDPDFEFFCLVDSADGVDQLGRFFG
DAKKTLNVLLELGVPGGRAGVRDAAQRKAVLDAIARYPDTLKLAGIELYEGVLKEEGEIRAFLQDAVALTRELAEAGRFA
RTPAILSGAGSAWYDVVAEEFAKASDAGFAEVVLRPGCYLTHDVGIYKKAQTDVFARNPIARRMGEGLLPALQLWAYVQS
VPEQDRAIIALGKRDAAFDAGLPEPARHFRPGRDSAPRDVAASEGWAVTGMMDQHAYLQIPPGADVKVGDMVAFDISHPC
LTFDKWRQLLVLDPQFRVTEVVETFF

Sequences:

>Translated_426_residues
MKVTNYQEPTINPLGKGLGNLPSASVPLGDATRLEWNLLAEDVSLPAAVLYADRIEHNLNWMQAFVQQYGAQFAPHGKTT
MAPQLFRRQLAAGAWGITLATAHQTQAAYHGGVRRVLLANQLVGRQNMTIIAELLSDPDFEFFCLVDSADGVDQLGRFFG
DAKKTLNVLLELGVPGGRAGVRDAAQRKAVLDAIARYPDTLKLAGIELYEGVLKEEGEIRAFLQDAVALTRELAEAGRFA
RTPAILSGAGSAWYDVVAEEFAKASDAGFAEVVLRPGCYLTHDVGIYKKAQTDVFARNPIARRMGEGLLPALQLWAYVQS
VPEQDRAIIALGKRDAAFDAGLPEPARHFRPGRDSAPRDVAASEGWAVTGMMDQHAYLQIPPGADVKVGDMVAFDISHPC
LTFDKWRQLLVLDPQFRVTEVVETFF
>Mature_426_residues
MKVTNYQEPTINPLGKGLGNLPSASVPLGDATRLEWNLLAEDVSLPAAVLYADRIEHNLNWMQAFVQQYGAQFAPHGKTT
MAPQLFRRQLAAGAWGITLATAHQTQAAYHGGVRRVLLANQLVGRQNMTIIAELLSDPDFEFFCLVDSADGVDQLGRFFG
DAKKTLNVLLELGVPGGRAGVRDAAQRKAVLDAIARYPDTLKLAGIELYEGVLKEEGEIRAFLQDAVALTRELAEAGRFA
RTPAILSGAGSAWYDVVAEEFAKASDAGFAEVVLRPGCYLTHDVGIYKKAQTDVFARNPIARRMGEGLLPALQLWAYVQS
VPEQDRAIIALGKRDAAFDAGLPEPARHFRPGRDSAPRDVAASEGWAVTGMMDQHAYLQIPPGADVKVGDMVAFDISHPC
LTFDKWRQLLVLDPQFRVTEVVETFF

Specific function: Catalyzes the reversible cleavage of D-theronine or D- allothreonine into glycine and acetaldehyde. Can also cleave D- beta-phenylserine, D-beta-hydroxy-alpha-aminovaleric acid, D-beta- 3,4-dihydroxyphenylserine and D-beta-3,4- methylenedioxyphenylserine

COG id: COG3616

COG function: function code E; Predicted amino acid aldolase or racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DSD1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: =4.1.2.42 [H]

Molecular weight: Translated: 46529; Mature: 46529

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTNYQEPTINPLGKGLGNLPSASVPLGDATRLEWNLLAEDVSLPAAVLYADRIEHNLN
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHH
WMQAFVQQYGAQFAPHGKTTMAPQLFRRQLAAGAWGITLATAHQTQAAYHGGVRRVLLAN
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
QLVGRQNMTIIAELLSDPDFEFFCLVDSADGVDQLGRFFGDAKKTLNVLLELGVPGGRAG
HHHCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VRDAAQRKAVLDAIARYPDTLKLAGIELYEGVLKEEGEIRAFLQDAVALTRELAEAGRFA
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
RTPAILSGAGSAWYDVVAEEFAKASDAGFAEVVLRPGCYLTHDVGIYKKAQTDVFARNPI
CCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCHHHHCCCHHHCCHH
ARRMGEGLLPALQLWAYVQSVPEQDRAIIALGKRDAAFDAGLPEPARHFRPGRDSAPRDV
HHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCC
AASEGWAVTGMMDQHAYLQIPPGADVKVGDMVAFDISHPCLTFDKWRQLLVLDPQFRVTE
CCCCCEEEEEEECCCCEEEECCCCCEEECCEEEEECCCCCCCHHHHCEEEEECCCHHHHH
VVETFF
HHHHHC
>Mature Secondary Structure
MKVTNYQEPTINPLGKGLGNLPSASVPLGDATRLEWNLLAEDVSLPAAVLYADRIEHNLN
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHH
WMQAFVQQYGAQFAPHGKTTMAPQLFRRQLAAGAWGITLATAHQTQAAYHGGVRRVLLAN
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
QLVGRQNMTIIAELLSDPDFEFFCLVDSADGVDQLGRFFGDAKKTLNVLLELGVPGGRAG
HHHCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VRDAAQRKAVLDAIARYPDTLKLAGIELYEGVLKEEGEIRAFLQDAVALTRELAEAGRFA
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
RTPAILSGAGSAWYDVVAEEFAKASDAGFAEVVLRPGCYLTHDVGIYKKAQTDVFARNPI
CCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCHHHHCCCHHHCCHH
ARRMGEGLLPALQLWAYVQSVPEQDRAIIALGKRDAAFDAGLPEPARHFRPGRDSAPRDV
HHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCC
AASEGWAVTGMMDQHAYLQIPPGADVKVGDMVAFDISHPCLTFDKWRQLLVLDPQFRVTE
CCCCCEEEEEEECCCCEEEECCCCCEEECCEEEEECCCCCCCHHHHCEEEEECCCHHHHH
VVETFF
HHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9642221 [H]