Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352738

Identifier: 115352738

GI number: 115352738

Start: 2960000

End: 2960866

Strand: Direct

Name: 115352738

Synonym: Bamb_2687

Alternate gene names: NA

Gene position: 2960000-2960866 (Clockwise)

Preceding gene: 115352737

Following gene: 115352739

Centisome position: 83.23

GC content: 57.79

Gene sequence:

>867_bases
ATGGCTGACGGACAACAGGACAAGGTGCTCGGGACCGGTGCGGCGATGCTGACCCCGACGGGATACCAGGATCGGCCGAA
GGTGGCGATCAATATCTGCGACAAGCATGTGACGCCGGCACCGAAATGGATCGTCGGCACCTGTCCGTTCTACTATCGGC
CGCTTCACGGGGCGTATATGGAGACGGTCGAGAAGGTCAGCATGTCGAGCATCTGGTCGACCATCAAGGGTTTCGCCCTA
TCGTGGGATCCGTGGACCGACTCGGACGTCGCGCACCGACTCCTGCACCGCCGTGAAGAATTGATCAAGATAGACAGCAC
GAATTCCGACTGGTCTCGTCATGGCAACTTCATGATGCGTCACATCGGGTGCGGACATAAGCCGCCCGATTACTACATCA
GCTACGGTTACTACTACTGCTCCGACTATGGAGCGAATCTCTATCCGAGCCTCAGCCCCCAAGGGAAAGCGTGGCTGAAC
AAAGCGCGCAAGCTGCTCCAGGTCAACATGGAAGACGGGTTGAATCAGAACATGATGGGCAACACGATCCAGATGGCCAG
CCCGACGCCGGGAAACGGTAGCGTCGATATGACGTGGCCACAGTTCGAGCTGGAAATAAACACCGAAAAGTTCAAGGAAT
TTGCATTCAAGACACACCCGATGGCCTACCTCGACGGAGGATTGGCCGACCTGCCAATCATGGATCTCGTCAGGATCGGG
ATGCGCCCGAACATTCAGGAATGGGGCGACGGAAGAACGTGGGGGCAGGCTTTCGATTCCGCCATCCCTGTTCTCCGGAA
AAAAGCCGAGGAATCGGACGCCGACGATCCGGTCGGCAAGGCGCTCGGAAGGCTGCTGGCGAAGTGA

Upstream 100 bases:

>100_bases
AAGCTGCTCTCGGAAGGCGTCACCAATGCGGCAGGTGAGACGGGGCTCACGCAGAGCCACGTGCCGCACGACGTCGTCGT
CAAGTTTCTAGGGAAATCGA

Downstream 100 bases:

>100_bases
CATGCGAAAAGGCAAACGATGGCTTTGGGTCGCGGGATGCGTGCTTGTTCTCCCGATCGCTATTTACGGATATACGGAAA
TGACATCAGGGTGGGACACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MADGQQDKVLGTGAAMLTPTGYQDRPKVAINICDKHVTPAPKWIVGTCPFYYRPLHGAYMETVEKVSMSSIWSTIKGFAL
SWDPWTDSDVAHRLLHRREELIKIDSTNSDWSRHGNFMMRHIGCGHKPPDYYISYGYYYCSDYGANLYPSLSPQGKAWLN
KARKLLQVNMEDGLNQNMMGNTIQMASPTPGNGSVDMTWPQFELEINTEKFKEFAFKTHPMAYLDGGLADLPIMDLVRIG
MRPNIQEWGDGRTWGQAFDSAIPVLRKKAEESDADDPVGKALGRLLAK

Sequences:

>Translated_288_residues
MADGQQDKVLGTGAAMLTPTGYQDRPKVAINICDKHVTPAPKWIVGTCPFYYRPLHGAYMETVEKVSMSSIWSTIKGFAL
SWDPWTDSDVAHRLLHRREELIKIDSTNSDWSRHGNFMMRHIGCGHKPPDYYISYGYYYCSDYGANLYPSLSPQGKAWLN
KARKLLQVNMEDGLNQNMMGNTIQMASPTPGNGSVDMTWPQFELEINTEKFKEFAFKTHPMAYLDGGLADLPIMDLVRIG
MRPNIQEWGDGRTWGQAFDSAIPVLRKKAEESDADDPVGKALGRLLAK
>Mature_287_residues
ADGQQDKVLGTGAAMLTPTGYQDRPKVAINICDKHVTPAPKWIVGTCPFYYRPLHGAYMETVEKVSMSSIWSTIKGFALS
WDPWTDSDVAHRLLHRREELIKIDSTNSDWSRHGNFMMRHIGCGHKPPDYYISYGYYYCSDYGANLYPSLSPQGKAWLNK
ARKLLQVNMEDGLNQNMMGNTIQMASPTPGNGSVDMTWPQFELEINTEKFKEFAFKTHPMAYLDGGLADLPIMDLVRIGM
RPNIQEWGDGRTWGQAFDSAIPVLRKKAEESDADDPVGKALGRLLAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32431; Mature: 32300

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADGQQDKVLGTGAAMLTPTGYQDRPKVAINICDKHVTPAPKWIVGTCPFYYRPLHGAYM
CCCCCCCCEEECCCCEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHCCCCHHHH
ETVEKVSMSSIWSTIKGFALSWDPWTDSDVAHRLLHRREELIKIDSTNSDWSRHGNFMMR
HHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHCCCCEE
HIGCGHKPPDYYISYGYYYCSDYGANLYPSLSPQGKAWLNKARKLLQVNMEDGLNQNMMG
ECCCCCCCCCCEEEECEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCC
NTIQMASPTPGNGSVDMTWPQFELEINTEKFKEFAFKTHPMAYLDGGLADLPIMDLVRIG
CEEEECCCCCCCCCEEEECCEEEEEECHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHC
MRPNIQEWGDGRTWGQAFDSAIPVLRKKAEESDADDPVGKALGRLLAK
CCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ADGQQDKVLGTGAAMLTPTGYQDRPKVAINICDKHVTPAPKWIVGTCPFYYRPLHGAYM
CCCCCCCEEECCCCEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHCCCCHHHH
ETVEKVSMSSIWSTIKGFALSWDPWTDSDVAHRLLHRREELIKIDSTNSDWSRHGNFMMR
HHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHCCCCEE
HIGCGHKPPDYYISYGYYYCSDYGANLYPSLSPQGKAWLNKARKLLQVNMEDGLNQNMMG
ECCCCCCCCCCEEEECEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCC
NTIQMASPTPGNGSVDMTWPQFELEINTEKFKEFAFKTHPMAYLDGGLADLPIMDLVRIG
CEEEECCCCCCCCCEEEECCEEEEEECHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHC
MRPNIQEWGDGRTWGQAFDSAIPVLRKKAEESDADDPVGKALGRLLAK
CCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA