| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352558
Identifier: 115352558
GI number: 115352558
Start: 2764445
End: 2764906
Strand: Direct
Name: 115352558
Synonym: Bamb_2507
Alternate gene names: NA
Gene position: 2764445-2764906 (Clockwise)
Preceding gene: 115352557
Following gene: 115352559
Centisome position: 77.73
GC content: 63.64
Gene sequence:
>462_bases GTGCAATACTGGCTGATGAAGTCCGAACCGGACGAAGCAAGCATCGACGATCTCGCCCACGCGCCGCAGCACTCGCTGCC ATGGACCGGCGTGCGCAACTATCAGGCGCGCAATTTCATGCGCGACACGATGAAGATCGGCGACGGCGTACTGTTCTATC ACTCGAGCTGCCCCGAGCCGGGCATCGCGGGCCTTGCCGAAGTGTCGTCGACGCCCTACCCCGATCCCACCCAGTTCGAT CCGAAAAGCCCGTATTACGATCCGAAGTCGACGCAGGAAGCACCGCGCTGGCTGCTCGTCGACGTGCGCTTCGTGAAAAA GTCGCCGCTCGTGCCGCTCGCCGCGCTGCGCGAACACGACGAACTCGCCGACATGCGCGTGCTCGCACGCGGCAACCGGC TGTCGATCACGCCGGTCACGCGCGCCGAATGGCGCTTCATCACCGAAAAGCTGATGAAGTAG
Upstream 100 bases:
>100_bases CATCGGGCCATCCCGATGCCGTTTCCTTTTTAAGGTCTGTCTGCATGCCGAACGCGTATGCAGCCAGACCGTCACGCCCT TTCTGCATCGATCACGATCC
Downstream 100 bases:
>100_bases GCACGCGCAGCAGGCGCACGCAGTAGGCCCGCGCAGCAGGCGCACGCAAGCCAAACGTCAAATCCCGTCAACACGCGCCA CCGCCACGGAACTCGCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MQYWLMKSEPDEASIDDLAHAPQHSLPWTGVRNYQARNFMRDTMKIGDGVLFYHSSCPEPGIAGLAEVSSTPYPDPTQFD PKSPYYDPKSTQEAPRWLLVDVRFVKKSPLVPLAALREHDELADMRVLARGNRLSITPVTRAEWRFITEKLMK
Sequences:
>Translated_153_residues MQYWLMKSEPDEASIDDLAHAPQHSLPWTGVRNYQARNFMRDTMKIGDGVLFYHSSCPEPGIAGLAEVSSTPYPDPTQFD PKSPYYDPKSTQEAPRWLLVDVRFVKKSPLVPLAALREHDELADMRVLARGNRLSITPVTRAEWRFITEKLMK >Mature_153_residues MQYWLMKSEPDEASIDDLAHAPQHSLPWTGVRNYQARNFMRDTMKIGDGVLFYHSSCPEPGIAGLAEVSSTPYPDPTQFD PKSPYYDPKSTQEAPRWLLVDVRFVKKSPLVPLAALREHDELADMRVLARGNRLSITPVTRAEWRFITEKLMK
Specific function: Unknown
COG id: COG2947
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI83267861, Length=163, Percent_Identity=44.1717791411043, Blast_Score=142, Evalue=8e-35, Organism=Homo sapiens, GI40806221, Length=163, Percent_Identity=44.1717791411043, Blast_Score=142, Evalue=8e-35, Organism=Homo sapiens, GI7661804, Length=163, Percent_Identity=44.1717791411043, Blast_Score=142, Evalue=8e-35, Organism=Homo sapiens, GI83267859, Length=106, Percent_Identity=49.0566037735849, Blast_Score=115, Evalue=1e-26, Organism=Homo sapiens, GI40806219, Length=106, Percent_Identity=49.0566037735849, Blast_Score=115, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17532; Mature: 17532
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQYWLMKSEPDEASIDDLAHAPQHSLPWTGVRNYQARNFMRDTMKIGDGVLFYHSSCPEP CCEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCC GIAGLAEVSSTPYPDPTQFDPKSPYYDPKSTQEAPRWLLVDVRFVKKSPLVPLAALREHD CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH ELADMRVLARGNRLSITPVTRAEWRFITEKLMK HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure MQYWLMKSEPDEASIDDLAHAPQHSLPWTGVRNYQARNFMRDTMKIGDGVLFYHSSCPEP CCEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCC GIAGLAEVSSTPYPDPTQFDPKSPYYDPKSTQEAPRWLLVDVRFVKKSPLVPLAALREHD CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH ELADMRVLARGNRLSITPVTRAEWRFITEKLMK HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA