Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352559

Identifier: 115352559

GI number: 115352559

Start: 2765130

End: 2765867

Strand: Direct

Name: 115352559

Synonym: Bamb_2508

Alternate gene names: NA

Gene position: 2765130-2765867 (Clockwise)

Preceding gene: 115352558

Following gene: 115352562

Centisome position: 77.75

GC content: 68.97

Gene sequence:

>738_bases
ATGACCAAGAAAACCGCACTCGCGCTGTCGCTCGCCCTCGCCGCCGCCGTGCCCGTCGCGCTGACGCTCGCGTCGCCGGC
CGCGCATGCGCAGGCCGCGAACCCGCACTTCCCCGAGCCGGCGGGCGTGCTGTCGCTGTCGTCGCAGGCCAGCGCCGACG
TGCCGCAGGACATCATCCACATCACGCTGTTCTACGAACAGCAGGCGAAGGACCCGGGCAGCCTCACGTCCGCGCTGAAC
CAGCGCGCCGATGCCGCGCTCGCGCAGGCGAAGGGCGTGTCGGGCGTCACCGCGCACACCGGTGCGTTCTCCGTGTATCC
GAGCACCGATCGCGACGGCAAGATTTCCGCATGGCGCGGCCGTACCGAAGTCGTGCTCGAATCGCGCGATTTCGCGGCGG
CGTCGAAGCTCGCGGGCCAGTTGTCGAACCAGATGCAGATCGCGAACGTCGAGTTCTCGCTGTCGCCCGAAGCGCAGCGC
GCGGCCGAGCAGAAGCTCACGACCGAAGCGATCAAGTCGTTCCGCGCACGCGCGGACGAAGCCGCGAAGGCGTTCGGCTA
CGGCAGCTACTCGATCCGCGACGTGAACGTCGGCGGCGGGCGCAACGTGCAGCCGTATCCGCGCATGATGGCGATGGCCG
CGGCGCCGATGGACGCGAAGATGAGCGCACCGATCGCGGTCGAAGGCGGCAAGGCGACCGTGTCGGTCACGGTCAACGGC
TCGGTGCAGATGAAGTAA

Upstream 100 bases:

>100_bases
CTGTCGCCCGATCTGGCCGACGGCCGTATTTTCGTCGCGCGGCACGCCCGCGTCGCGCACGCGTGATCCGCGTGCGCGCC
CTCGCACAAGGAGTCCAACA

Downstream 100 bases:

>100_bases
CGCACATCGCGCCGCACTCCGCAGATGCAAAAACGCCGGCCCGAGGGCCGGCGTTTTTTCGTTCGCGCTCCTGCGATCGA
TGCGCATGCCGATCGTCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTKKTALALSLALAAAVPVALTLASPAAHAQAANPHFPEPAGVLSLSSQASADVPQDIIHITLFYEQQAKDPGSLTSALN
QRADAALAQAKGVSGVTAHTGAFSVYPSTDRDGKISAWRGRTEVVLESRDFAAASKLAGQLSNQMQIANVEFSLSPEAQR
AAEQKLTTEAIKSFRARADEAAKAFGYGSYSIRDVNVGGGRNVQPYPRMMAMAAAPMDAKMSAPIAVEGGKATVSVTVNG
SVQMK

Sequences:

>Translated_245_residues
MTKKTALALSLALAAAVPVALTLASPAAHAQAANPHFPEPAGVLSLSSQASADVPQDIIHITLFYEQQAKDPGSLTSALN
QRADAALAQAKGVSGVTAHTGAFSVYPSTDRDGKISAWRGRTEVVLESRDFAAASKLAGQLSNQMQIANVEFSLSPEAQR
AAEQKLTTEAIKSFRARADEAAKAFGYGSYSIRDVNVGGGRNVQPYPRMMAMAAAPMDAKMSAPIAVEGGKATVSVTVNG
SVQMK
>Mature_244_residues
TKKTALALSLALAAAVPVALTLASPAAHAQAANPHFPEPAGVLSLSSQASADVPQDIIHITLFYEQQAKDPGSLTSALNQ
RADAALAQAKGVSGVTAHTGAFSVYPSTDRDGKISAWRGRTEVVLESRDFAAASKLAGQLSNQMQIANVEFSLSPEAQRA
AEQKLTTEAIKSFRARADEAAKAFGYGSYSIRDVNVGGGRNVQPYPRMMAMAAAPMDAKMSAPIAVEGGKATVSVTVNGS
VQMK

Specific function: Unknown

COG id: COG3471

COG function: function code S; Predicted periplasmic/secreted protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25457; Mature: 25326

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKTALALSLALAAAVPVALTLASPAAHAQAANPHFPEPAGVLSLSSQASADVPQDIIH
CCCHHHHHHHHHHHHHHHHHEEECCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCEEE
ITLFYEQQAKDPGSLTSALNQRADAALAQAKGVSGVTAHTGAFSVYPSTDRDGKISAWRG
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCCCCEEEECC
RTEVVLESRDFAAASKLAGQLSNQMQIANVEFSLSPEAQRAAEQKLTTEAIKSFRARADE
CEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
AAKAFGYGSYSIRDVNVGGGRNVQPYPRMMAMAAAPMDAKMSAPIAVEGGKATVSVTVNG
HHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEECC
SVQMK
EEEEC
>Mature Secondary Structure 
TKKTALALSLALAAAVPVALTLASPAAHAQAANPHFPEPAGVLSLSSQASADVPQDIIH
CCHHHHHHHHHHHHHHHHHEEECCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCEEE
ITLFYEQQAKDPGSLTSALNQRADAALAQAKGVSGVTAHTGAFSVYPSTDRDGKISAWRG
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCCCCEEEECC
RTEVVLESRDFAAASKLAGQLSNQMQIANVEFSLSPEAQRAAEQKLTTEAIKSFRARADE
CEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
AAKAFGYGSYSIRDVNVGGGRNVQPYPRMMAMAAAPMDAKMSAPIAVEGGKATVSVTVNG
HHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEECC
SVQMK
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA