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The map label for this gene is rng [H]

Identifier: 115352390

GI number: 115352390

Start: 2575111

End: 2576580

Strand: Direct

Name: rng [H]

Synonym: Bamb_2339

Alternate gene names: 115352390

Gene position: 2575111-2576580 (Clockwise)

Preceding gene: 115352389

Following gene: 115352391

Centisome position: 72.4

GC content: 65.71

Gene sequence:

>1470_bases
ATGAACGAAGAAATCCTGATCAACCTCACGCCCCAGGAAACACGGGTCGCACTCGTCCAGCAAGGCGCGGTGCAGGAGCT
TCACGTCGAGCGCACGCTGTCGCGCGGGCGGGTCGGCAACATCTACCTCGGCAAGGTCGTGCGCGTGCTACCCGGCATGC
AGTCGGCGTTCATCGACATCGGCCTGGAACGCGCGGCGTTCCTGCACGTCGCGGACATCTGGCATCCGCGCCTCGCCGGC
GAGCCGCAGTCGGGCACGCCGCACCAGCCGATCGAGAAGATCGTGTTCGAAGGCCAGACGCTGATGGTCCAGGTGATCAA
GGATCCGATCGGCACGAAGGGCGCGCGACTGTCGACGCAAGTCAGCATCGCGGGCCGCACGCTCGTGTATCTGCCGCAGG
AGCCGCACATCGGCATCTCGCAGAAAATCGAGAGCGAGGCCGAGCGCGAGGCCGTGCGCGCGCGCCTGACCGCCGTGATC
CCGCCGGACGAGAAAGGCGGCTACATCGTGCGCACGATCGCCGAGGATGCGACCTCCGAGGAGCTGGCCGGCGACGTCAC
GTACCTGCGCAAGACCTGGGCGACGATCGTCGCGCAGGCGCAGCGGCTGCCGGCGACGAGCCTGCTGTACCAGGATCTCG
ACCTCGCGCAGCGCGTGCTGCGCGATTTCTCGAACGACGACACGACGCGTATCCAGGTCGATTCTCGCGAGACGTACCAG
CGCCTCGCGGAATTCGCGGACGAGTTCACGCCGGCGGTGAGTCCGAAGCTGCATCACTACACCGGCGAGCGGCCGCTGTT
CGACCTGTACAACATCGAGACGGAGATCCAGCGCGCGCTGTCGCGCCGCGTCGACCTGAAGTCGGGCGGCTACCTGATGA
TCGACCAGACCGAGGCGATGACGACGATCGACGTGAACACCGGCGGCTACGTCGGCGCACGCAACTTCGACGACACGATC
TTCAAGACCAACCTCGAGGCCGCGCACACGATCGCGCGGCAATTGCGGCTGCGCAATCTCGGCGGGATCATCATCATCGA
CTTCATCGACATGGAGAACGCCGAGCATCGCGACGCGGTGCTGTCGGAGCTGAAGAAGGCGCTGTCGCGCGACCGCACGC
GCGTGACGGTCAACGGCTTCTCGCAGCTCGGGCTCGTCGAGATGACGCGCAAGCGCACGCGCGAATCGCTCGCGCACGTG
CTGTGCGAGCCGTGCCCGACCTGCCAGGGCAAGGGCCAGGTGAAGACGTCGCGCACCGTGTGCTACGACATCCTGCGCGA
GATCCTGCGCGAGTCGCGCCAGTTCAATCCGCGCGAATTCCGCGTGATCGCCGCGCAGCAGGTGATCGACCTGTTCCTCG
ACGAGGAGTCGCAGCATCTCGCGATGCTGATCGACTTCATCGGCAAGCCGGTGTCGCTGCAGGTCGAGTCGAACCTGAGC
CAGGAGCAGTACGATATCGTGCTGATGTAA

Upstream 100 bases:

>100_bases
TCGAGCGAATCGACGGTTCCCATTCGGGTATCATGGGTCTGCCCCTTTTTGAGACTGCCGCGTTGCTCCGCACCGCGCGC
GTCGCCTTCTGAATCCCACC

Downstream 100 bases:

>100_bases
CCTCCTGCCTGCCCGCCGCCGGCTTTGCCGCGCGGCGCCCCGATGCGGCCGCCCGGGCCGCTTGCGCATGTCGCGCCAGC
GCCCGCCGCCGCCCTTTTTC

Product: ribonuclease

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MNEEILINLTPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWHPRLAG
EPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVI
PPDEKGGYIVRTIAEDATSEELAGDVTYLRKTWATIVAQAQRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQ
RLAEFADEFTPAVSPKLHHYTGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI
FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV
LCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
QEQYDIVLM

Sequences:

>Translated_489_residues
MNEEILINLTPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWHPRLAG
EPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVI
PPDEKGGYIVRTIAEDATSEELAGDVTYLRKTWATIVAQAQRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQ
RLAEFADEFTPAVSPKLHHYTGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI
FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV
LCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
QEQYDIVLM
>Mature_489_residues
MNEEILINLTPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWHPRLAG
EPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVI
PPDEKGGYIVRTIAEDATSEELAGDVTYLRKTWATIVAQAQRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQ
RLAEFADEFTPAVSPKLHHYTGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI
FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV
LCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
QEQYDIVLM

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=493, Percent_Identity=56.1866125760649, Blast_Score=541, Evalue=1e-155,
Organism=Escherichia coli, GI1787325, Length=461, Percent_Identity=37.9609544468547, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 55098; Mature: 55098

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEILINLTPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDI
CCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH
GLERAAFLHVADIWHPRLAGEPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQ
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEE
VSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSE
EEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEECCCCCHH
ELAGDVTYLRKTWATIVAQAQRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
RLAEFADEFTPAVSPKLHHYTGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAM
HHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCE
TTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAV
EEEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH
LSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTV
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
CYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
HHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
QEQYDIVLM
CCCCCEEEC
>Mature Secondary Structure
MNEEILINLTPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDI
CCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH
GLERAAFLHVADIWHPRLAGEPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQ
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEE
VSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSE
EEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEECCCCCHH
ELAGDVTYLRKTWATIVAQAQRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
RLAEFADEFTPAVSPKLHHYTGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAM
HHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCE
TTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAV
EEEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH
LSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTV
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
CYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
HHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
QEQYDIVLM
CCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]