| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yhhW [C]
Identifier: 115352292
GI number: 115352292
Start: 2474208
End: 2475080
Strand: Direct
Name: yhhW [C]
Synonym: Bamb_2241
Alternate gene names: 115352292
Gene position: 2474208-2475080 (Clockwise)
Preceding gene: 115352290
Following gene: 115352293
Centisome position: 69.57
GC content: 68.96
Gene sequence:
>873_bases ATGACGACCGCTCGCTCGCTTGACCGCACCTACCCCGCGCTTCGCACCACCGAAGGCGGCGGCTTCGTGGTTCACCGCCC GTTCCCGACCCGACTGCTGATGGATTTCGATCCGTTCCTGTTGCTCGATGAAATGGGCCCCGTCGACTATGCGCCCGGCG AAGCCAAGGGCGCGCCGGACCATCCGCATCGCGGCTTCGAGACGGTGACCTACGTGCTCGACGGCCGCTTTCGCCATCGC GACTCGGCCGGCCATGCCGGCACGCTCGGGCCCGGCGACGTGCAGTGGATGACGGCCGGCGCGGGGGTCGTGCACAGCGA AATGCCGGACCCCGAATTCGCGCAGGCGGGCGGCCGCTCGCACGGCTTCCAGCTGTGGGTGAACCTGCCGCGCCGCGACA AGCTGATCGCACCGCGCTACCAGGAAATCCCGGCCGACCGCATCCCCAGCGCCACGTCGCCGGACGGTCGTGCGCGGGTC CGCGTGATTGCCGGCGAAGCGTTCGGTGTGCGTGCCGCGATCGAGACGCGCACGCCGATCCTGTACCAGCATTTCACGCT GCAACCGGGTGCAACGGTCACGCAGCCGGTGCCGCCAGGTTATCGCGTGTTCGCGTACCCGCTCGACGGAGCGGGCCGCT ACGGGCCCGACAGGCAGCTCGTCGACGCACGGCAGATGGTCGTCTACGGTGACGATGGCGACGCGGTGACGTTCGAAGCC GGCGATACGCCGCTCGACCTGCTGCTGATCGGCGGCGTGCCGCTCAACGAGCCGATCGTCCGCTATGGCCCGTTCGTGAT GAATACCGAGGAAGAGATCCGGCAGGCCGTCGTCGACTACCAGACGGGCCGCATGGGCCGCATCGAAGCGTGA
Upstream 100 bases:
>100_bases AATCCATTGCGAACCGCCGCAAATCGGACCGCAAAACGCCCAATATAATAGCGCTATGTTTCAAAAATAACGCTATTCCG ATGATTTCGAGGGCTTCTGC
Downstream 100 bases:
>100_bases CGTGCAATCGGGGCCGCAGCTGCCGCGAAACCGCTTGTTTTGCGTCACAATAACTTCTTGATCCATGTGGCTGCCCGCCA CCAGAAGGAATCCGTCCCCT
Product: pirin domain-containing protein
Products: NA
Alternate protein names: Putative quercetinase; Pirin-like protein PA2418 [H]
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTTARSLDRTYPALRTTEGGGFVVHRPFPTRLLMDFDPFLLLDEMGPVDYAPGEAKGAPDHPHRGFETVTYVLDGRFRHR DSAGHAGTLGPGDVQWMTAGAGVVHSEMPDPEFAQAGGRSHGFQLWVNLPRRDKLIAPRYQEIPADRIPSATSPDGRARV RVIAGEAFGVRAAIETRTPILYQHFTLQPGATVTQPVPPGYRVFAYPLDGAGRYGPDRQLVDARQMVVYGDDGDAVTFEA GDTPLDLLLIGGVPLNEPIVRYGPFVMNTEEEIRQAVVDYQTGRMGRIEA
Sequences:
>Translated_290_residues MTTARSLDRTYPALRTTEGGGFVVHRPFPTRLLMDFDPFLLLDEMGPVDYAPGEAKGAPDHPHRGFETVTYVLDGRFRHR DSAGHAGTLGPGDVQWMTAGAGVVHSEMPDPEFAQAGGRSHGFQLWVNLPRRDKLIAPRYQEIPADRIPSATSPDGRARV RVIAGEAFGVRAAIETRTPILYQHFTLQPGATVTQPVPPGYRVFAYPLDGAGRYGPDRQLVDARQMVVYGDDGDAVTFEA GDTPLDLLLIGGVPLNEPIVRYGPFVMNTEEEIRQAVVDYQTGRMGRIEA >Mature_289_residues TTARSLDRTYPALRTTEGGGFVVHRPFPTRLLMDFDPFLLLDEMGPVDYAPGEAKGAPDHPHRGFETVTYVLDGRFRHRD SAGHAGTLGPGDVQWMTAGAGVVHSEMPDPEFAQAGGRSHGFQLWVNLPRRDKLIAPRYQEIPADRIPSATSPDGRARVR VIAGEAFGVRAAIETRTPILYQHFTLQPGATVTQPVPPGYRVFAYPLDGAGRYGPDRQLVDARQMVVYGDDGDAVTFEAG DTPLDLLLIGGVPLNEPIVRYGPFVMNTEEEIRQAVVDYQTGRMGRIEA
Specific function: Putative quercetin 2,3-dioxygenase [H]
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Homo sapiens, GI66363697, Length=290, Percent_Identity=43.1034482758621, Blast_Score=230, Evalue=1e-60, Organism=Homo sapiens, GI4505823, Length=290, Percent_Identity=43.1034482758621, Blast_Score=230, Evalue=1e-60, Organism=Escherichia coli, GI1789847, Length=105, Percent_Identity=36.1904761904762, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR008778 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin; PF05726 Pirin_C [H]
EC number: =1.13.11.24 [H]
Molecular weight: Translated: 31795; Mature: 31664
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTARSLDRTYPALRTTEGGGFVVHRPFPTRLLMDFDPFLLLDEMGPVDYAPGEAKGAPD CCCHHHHHHCCCCEEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCC HPHRGFETVTYVLDGRFRHRDSAGHAGTLGPGDVQWMTAGAGVVHSEMPDPEFAQAGGRS CCCCCCEEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHCCCCC HGFQLWVNLPRRDKLIAPRYQEIPADRIPSATSPDGRARVRVIAGEAFGVRAAIETRTPI CCEEEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCE LYQHFTLQPGATVTQPVPPGYRVFAYPLDGAGRYGPDRQLVDARQMVVYGDDGDAVTFEA EEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEEEEECCCCCEEEEEC GDTPLDLLLIGGVPLNEPIVRYGPFVMNTEEEIRQAVVDYQTGRMGRIEA CCCCEEEEEECCCCCCCCHHHHCCEEECCHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TTARSLDRTYPALRTTEGGGFVVHRPFPTRLLMDFDPFLLLDEMGPVDYAPGEAKGAPD CCHHHHHHCCCCEEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCC HPHRGFETVTYVLDGRFRHRDSAGHAGTLGPGDVQWMTAGAGVVHSEMPDPEFAQAGGRS CCCCCCEEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHCCCCC HGFQLWVNLPRRDKLIAPRYQEIPADRIPSATSPDGRARVRVIAGEAFGVRAAIETRTPI CCEEEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCE LYQHFTLQPGATVTQPVPPGYRVFAYPLDGAGRYGPDRQLVDARQMVVYGDDGDAVTFEA EEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEEEEECCCCCEEEEEC GDTPLDLLLIGGVPLNEPIVRYGPFVMNTEEEIRQAVVDYQTGRMGRIEA CCCCEEEEEECCCCCCCCHHHHCCEEECCHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]