Click here to switch to the map view.

The map label for this gene is exbD1 [H]

Identifier: 115352290

GI number: 115352290

Start: 2472320

End: 2472742

Strand: Direct

Name: exbD1 [H]

Synonym: Bamb_2239

Alternate gene names: 115352290

Gene position: 2472320-2472742 (Clockwise)

Preceding gene: 115352289

Following gene: 115352292

Centisome position: 69.51

GC content: 63.12

Gene sequence:

>423_bases
ATGAACACCGGCTTCAGCGATGACGACGACGATGGCGTGATGAGCGAGATCAACATGACGCCGCTCGTCGACGTCATGCT
CGTACTCCTGATCATCTTCCTCGTGACGATCCCGGCGATGCAGCACGCGGTGAAGATCGACTTGCCGCACGCGAGCAGCC
AGCCCGTCGACGAAAAGCCGCAAACGGTCGACGTCGCGATCCAGGGCAACGGCACGATCCTGTGGAACGACCAGACGGTC
ACGCGCGAGCAGCTGCAGGCACACATCGCGGAAGCGGCACAGCATCAGCCGCAACCGGAGTTGCACCTGCGCGCCGATCG
CAAGGTTGCCTATGAGCGTGTGGCGGAAGTGATGTCCGATGCACAGGCCGGCGGCCTGACGAAGCTCGGCTTCGTGACCG
AGCCGAGCGCGAAGGCGAAGTAA

Upstream 100 bases:

>100_bases
CACGCCTACTTCGTGACGGGCGCGCGCCTCGCGTCGTCGTCGCCCCGCGACGGCCTGCGTCTTGCGACGCGCGCCAGCTG
AGACGAGGTGAACCATGGCA

Downstream 100 bases:

>100_bases
CGCACGCGCGTTTGGCGGGTCGGCGGCGGCACCTGACCGGCCCCACAAAGTAAAAGGCCTTCATCGCCAGATGAAGGCCT
TTTTTCATGCGCACGCGGGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNTGFSDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPHASSQPVDEKPQTVDVAIQGNGTILWNDQTV
TREQLQAHIAEAAQHQPQPELHLRADRKVAYERVAEVMSDAQAGGLTKLGFVTEPSAKAK

Sequences:

>Translated_140_residues
MNTGFSDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPHASSQPVDEKPQTVDVAIQGNGTILWNDQTV
TREQLQAHIAEAAQHQPQPELHLRADRKVAYERVAEVMSDAQAGGLTKLGFVTEPSAKAK
>Mature_140_residues
MNTGFSDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPHASSQPVDEKPQTVDVAIQGNGTILWNDQTV
TREQLQAHIAEAAQHQPQPELHLRADRKVAYERVAEVMSDAQAGGLTKLGFVTEPSAKAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=134, Percent_Identity=38.0597014925373, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15282; Mature: 15282

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGFSDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPHASSQPVDEKP
CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
QTVDVAIQGNGTILWNDQTVTREQLQAHIAEAAQHQPQPELHLRADRKVAYERVAEVMSD
CEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHH
AQAGGLTKLGFVTEPSAKAK
HHCCCCEECCEEECCCCCCC
>Mature Secondary Structure
MNTGFSDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPHASSQPVDEKP
CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
QTVDVAIQGNGTILWNDQTVTREQLQAHIAEAAQHQPQPELHLRADRKVAYERVAEVMSD
CEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHH
AQAGGLTKLGFVTEPSAKAK
HHCCCCEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]