| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is gltI [H]
Identifier: 115352263
GI number: 115352263
Start: 2437616
End: 2438608
Strand: Direct
Name: gltI [H]
Synonym: Bamb_2212
Alternate gene names: 115352263
Gene position: 2437616-2438608 (Clockwise)
Preceding gene: 115352249
Following gene: 115352266
Centisome position: 68.54
GC content: 65.66
Gene sequence:
>993_bases ATGTTGCAATTATTTTTTATTTGGCAACATACGAATCCGCACTTTCCCGCCATCCGCCTTCGGAGACCTCCCATGACCAT CCCGCCCCGGTTGACCGCCCTTTTCGGCCGCAGCCTGCTCGTCGCCGCCTGCGCACTCGCGTGCGGCGCGTCGCTCGCCG CGGAGCCGCTGTCCGGCACGCTCGAGAAGATCCGGCAGGCCGGCCTGATCTCGATCGGCCACCGCGAAACGTCGGTGCCG TTCTCCTACGTCGACGCGAGCGGCAAGGTGATCGGCTTCTCGCAGGACCTGTGCGATCGCGTGATCGCCGCCGTGAAGGC GCGCACCGGCAAGCCCGACCTGCAGGTGCGCTTCATCCCGGTCACGTCGCAGAACCGCATCCCGCTCGTGCAGAACGGCA CCGTCGATCTCGAATGCGGGGTGACCACCAATCTCGCCGCGCGCCACGCGCAGGTCGCGTTCTCGACCACCTTCTTCGTC GCGACGACGCGCCTGCTCACGCGCACGAGCTCGGGCATCCGCGACTTCCCCGATCTCGCCGGCAAGACGGTCGTGACGAA CCAGGGCACGACGTCCGAACGCCTGCTGCGCAAGATGAACGAGGAAAAGAAGATGAACATGCAGATCATCAGCGCGAAGG ACTACGGCGAAGGACGCCTCACGCTCGAATCGGGCCGCGCGGCCGCCTACATGATGGACGACGTGCTGCTCGCCGGCGTG CGCCAGCTCGCGGCGAAACCGGCCGACTGGGCAATCGTCGGCACGCCGCAGTCGTCGGAAGCGTACGGATTCATGCTGCG CAAGGACGATCCGCAGTTCAAGGCGCTCGTCGACGGCGTGCTCGTGCAGCTGATGAAGAGCGGCGAGATCAATGCGCTGT ACGACAAGTGGTTCATGAAGCCGGTGCCGCCGAAGGGGCTCGCGTTCGACTTCCCGATGAGCGACGTGATCAGGACGCGC TACGCGGCGCCGAACGACGCACCGCTCGAGTGA
Upstream 100 bases:
>100_bases CTTGTCTAGACAACCCCGTTTTTAATGATTTCGACTCGGGAGTTTCCCTGATGCCGGGTGCGCCCGGCGGGAGTAGCCGG CCAGGCCCGGGAATTAACAT
Downstream 100 bases:
>100_bases GCGCCGCGCGGTGACATCGGCTCACGCGCGCGTCCACGCGACGCACGCCGCGTAGCCGGGCGCCGCGTCGAGCCAGCGCG CGTCGAACGCGGCCACGCCG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MLQLFFIWQHTNPHFPAIRLRRPPMTIPPRLTALFGRSLLVAACALACGASLAAEPLSGTLEKIRQAGLISIGHRETSVP FSYVDASGKVIGFSQDLCDRVIAAVKARTGKPDLQVRFIPVTSQNRIPLVQNGTVDLECGVTTNLAARHAQVAFSTTFFV ATTRLLTRTSSGIRDFPDLAGKTVVTNQGTTSERLLRKMNEEKKMNMQIISAKDYGEGRLTLESGRAAAYMMDDVLLAGV RQLAAKPADWAIVGTPQSSEAYGFMLRKDDPQFKALVDGVLVQLMKSGEINALYDKWFMKPVPPKGLAFDFPMSDVIRTR YAAPNDAPLE
Sequences:
>Translated_330_residues MLQLFFIWQHTNPHFPAIRLRRPPMTIPPRLTALFGRSLLVAACALACGASLAAEPLSGTLEKIRQAGLISIGHRETSVP FSYVDASGKVIGFSQDLCDRVIAAVKARTGKPDLQVRFIPVTSQNRIPLVQNGTVDLECGVTTNLAARHAQVAFSTTFFV ATTRLLTRTSSGIRDFPDLAGKTVVTNQGTTSERLLRKMNEEKKMNMQIISAKDYGEGRLTLESGRAAAYMMDDVLLAGV RQLAAKPADWAIVGTPQSSEAYGFMLRKDDPQFKALVDGVLVQLMKSGEINALYDKWFMKPVPPKGLAFDFPMSDVIRTR YAAPNDAPLE >Mature_330_residues MLQLFFIWQHTNPHFPAIRLRRPPMTIPPRLTALFGRSLLVAACALACGASLAAEPLSGTLEKIRQAGLISIGHRETSVP FSYVDASGKVIGFSQDLCDRVIAAVKARTGKPDLQVRFIPVTSQNRIPLVQNGTVDLECGVTTNLAARHAQVAFSTTFFV ATTRLLTRTSSGIRDFPDLAGKTVVTNQGTTSERLLRKMNEEKKMNMQIISAKDYGEGRLTLESGRAAAYMMDDVLLAGV RQLAAKPADWAIVGTPQSSEAYGFMLRKDDPQFKALVDGVLVQLMKSGEINALYDKWFMKPVPPKGLAFDFPMSDVIRTR YAAPNDAPLE
Specific function: Part of the binding-protein-dependent transport system for glutamate and aspartate. Binds to both aspartate and glutamate [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1786876, Length=270, Percent_Identity=58.5185185185185, Blast_Score=338, Evalue=3e-94, Organism=Escherichia coli, GI1788228, Length=273, Percent_Identity=24.5421245421245, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788649, Length=270, Percent_Identity=27.4074074074074, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 36171; Mature: 36171
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQLFFIWQHTNPHFPAIRLRRPPMTIPPRLTALFGRSLLVAACALACGASLAAEPLSGT CEEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHH LEKIRQAGLISIGHRETSVPFSYVDASGKVIGFSQDLCDRVIAAVKARTGKPDLQVRFIP HHHHHHCCCEEECCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEEEE VTSQNRIPLVQNGTVDLECGVTTNLAARHAQVAFSTTFFVATTRLLTRTSSGIRDFPDLA ECCCCCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC GKTVVTNQGTTSERLLRKMNEEKKMNMQIISAKDYGEGRLTLESGRAAAYMMDDVLLAGV CCEEEECCCCCHHHHHHHHCHHHCCCEEEEEECCCCCCEEEEECCCEEEHHHHHHHHHHH RQLAAKPADWAIVGTPQSSEAYGFMLRKDDPQFKALVDGVLVQLMKSGEINALYDKWFMK HHHHCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCC PVPPKGLAFDFPMSDVIRTRYAAPNDAPLE CCCCCCCEEECCHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MLQLFFIWQHTNPHFPAIRLRRPPMTIPPRLTALFGRSLLVAACALACGASLAAEPLSGT CEEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHH LEKIRQAGLISIGHRETSVPFSYVDASGKVIGFSQDLCDRVIAAVKARTGKPDLQVRFIP HHHHHHCCCEEECCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEEEE VTSQNRIPLVQNGTVDLECGVTTNLAARHAQVAFSTTFFVATTRLLTRTSSGIRDFPDLA ECCCCCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC GKTVVTNQGTTSERLLRKMNEEKKMNMQIISAKDYGEGRLTLESGRAAAYMMDDVLLAGV CCEEEECCCCCHHHHHHHHCHHHCCCEEEEEECCCCCCEEEEECCCEEEHHHHHHHHHHH RQLAAKPADWAIVGTPQSSEAYGFMLRKDDPQFKALVDGVLVQLMKSGEINALYDKWFMK HHHHCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCC PVPPKGLAFDFPMSDVIRTRYAAPNDAPLE CCCCCCCEEECCHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 10493123; 1091635; 1091636 [H]