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The map label for this gene is sdhA [C]

Identifier: 115352011

GI number: 115352011

Start: 2156955

End: 2158694

Strand: Direct

Name: sdhA [C]

Synonym: Bamb_1960

Alternate gene names: 115352011

Gene position: 2156955-2158694 (Clockwise)

Preceding gene: 115352010

Following gene: 115352012

Centisome position: 60.65

GC content: 66.72

Gene sequence:

>1740_bases
ATGAATACCCATGTACTCGAATACGACATCGTCGTGGTCGGCGGCGGCACGGCCGGCCCGATGGCCGCGATCAAGGCCAA
GGAGCGCGACCCGTCGCTGCGCGTGCTGCTGCTGGAGAAGGCCAACGTGAAACGCAGCGGCGCGATCTCGATGGGGATGG
ACGGCCTGAACAACGCGGTGATCCCCGGCCATGCGACACCCGAGCAGTACACGCGCGAGATCACGATTGCCAACGACGGG
ATCGTCGACCAGGAAGCCGTCTACGCGTATGCGACGCACAGCTTCGCGACGATCGAGCAGCTCGACCGCTGGGGCGTGAA
GTTCGAAAAGGACGGCACCGGCGACTACGCGGTGAAGAAGGTCCACCACATGGGTTCGTACGTGCTGCCGATGCCGGAAG
GACACGACATCAAGAAGGTGCTGTACCGGCAGTTGAAGCGCGCGCGCATCGCGATCACGAACCGGATCGTCGCGACGCGC
GTGCTGACCGACGCGCAGGGCCGCGCGAGCGGCGTGCTCGGCTTCGACTGCCGCACCGCCGATTTTCACGTGATCCGCGC
GAAGGCCGTGATCCTGTGCTGCGGCGCGGCCGGCCGTCTCGGGCTGCCCGCGTCCGGCTACCTGATGGGCACGTACGAGA
ACCCGACCAACGCGGGCGACGGCTACGCGATGGCGTACCACGCAGGCGCGGCGCTCGCGAACCTCGAGTGCTTCCAGATC
AACCCGCTGATCAAGGACTACAACGGCCCGGCCTGCGCGTACGTGACGGGCCCGCTCGGCGGCTTCACCGCGAACGGCAA
GGGCGAGCGCTTCATCGAGTGCGACTACTGGAGCGGCCAGATGATGTGGGAGTTCTACCAGGAACTGCAAAGCGGCAACG
GTCCGGTGTTCCTGAAGCTCGACCACCTCGCCGAGGAAACGATCCAGACCATCGAGCAGATCCTGCACACGAACGAGCGG
CCGAGCCGCGGCCGCTTCCATGCGGGACGCGGCACCGACTACCGGCGCCAGATGGTCGAGATGCACATCTCCGAGATCGG
TTTCTGCAGCGGCCACAGCGCGTCCGGCGTGTACGTGAACGCGCGCGCGGAAACGACCGTGCCGGGGCTCTACGCGGCCG
GCGACATGGCGGCCGTCCCGCACAACTACATGCTCGGCGCGTTCACCTACGGCTGGTTCGCCGGGCAGAACGCCGCCGAC
TACGTGGCCGGCCGCGATCACGCGGCGGTGGACGACGAACAGGTCGCCGCCGAACGCACCCGCGTGCTCGCGCCGCTCAC
GCGCGAGCGCGGCCTCGCGCCGGCGCAGGTCGAATACAAGCTGCGCCGCATGGTGAACGACTATCTTCAACCACCGAAGG
TGACGCGCAAGATGGAAATCGGCTTGCAACGTTTTGACGGAATTACAGAGGATATCGAAGAAATCAAGGCGAATCACCCG
CATGAACTGATGCGCGCGGCCGAAGTGCGCGCGATTCGCGACTGCGCCGAGATGGCCGCGCGGGCGTCGCTGTTCCGCAC
CGAGAGCCGCTGGGGACTGTATCACCATCGCGTCGACTTCCCGCATCGCAACGACGCCGAATGGTTCTGCCACACCTGGC
TGCGCAAAGGCGTCGACGGCACGATGCGCAGCGAGAAGCGGCCGGTCGAACCGTACGTCGTGCCGCTCGCCGACGACGAA
CGCAGCGCCTACGCGCAGTTGCGCATCCGCGAACCGGCCGCACGCGCGGCCGCCCTTTGA

Upstream 100 bases:

>100_bases
CACCGATCGACTACGAACACCTGTACTTCCGCGGCGACGCCTTCCAGTACCGGTTGCGCATCGATCGGCAGAAGGCGCTC
CAACCTGCAAGGAACCCGCA

Downstream 100 bases:

>100_bases
GGAACCTTGCCATGCCCCATACCCCGCACGACATCTTCCTGCGCAGCAGCGCGCCCGTGACGATCGACGAGGACCGCTGC
ATCGCCGACAAGGGCTGCAC

Product: putative oxidoreductase

Products: FADH2; Fumarate [C]

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MNTHVLEYDIVVVGGGTAGPMAAIKAKERDPSLRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTREITIANDG
IVDQEAVYAYATHSFATIEQLDRWGVKFEKDGTGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARIAITNRIVATR
VLTDAQGRASGVLGFDCRTADFHVIRAKAVILCCGAAGRLGLPASGYLMGTYENPTNAGDGYAMAYHAGAALANLECFQI
NPLIKDYNGPACAYVTGPLGGFTANGKGERFIECDYWSGQMMWEFYQELQSGNGPVFLKLDHLAEETIQTIEQILHTNER
PSRGRFHAGRGTDYRRQMVEMHISEIGFCSGHSASGVYVNARAETTVPGLYAAGDMAAVPHNYMLGAFTYGWFAGQNAAD
YVAGRDHAAVDDEQVAAERTRVLAPLTRERGLAPAQVEYKLRRMVNDYLQPPKVTRKMEIGLQRFDGITEDIEEIKANHP
HELMRAAEVRAIRDCAEMAARASLFRTESRWGLYHHRVDFPHRNDAEWFCHTWLRKGVDGTMRSEKRPVEPYVVPLADDE
RSAYAQLRIREPAARAAAL

Sequences:

>Translated_579_residues
MNTHVLEYDIVVVGGGTAGPMAAIKAKERDPSLRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTREITIANDG
IVDQEAVYAYATHSFATIEQLDRWGVKFEKDGTGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARIAITNRIVATR
VLTDAQGRASGVLGFDCRTADFHVIRAKAVILCCGAAGRLGLPASGYLMGTYENPTNAGDGYAMAYHAGAALANLECFQI
NPLIKDYNGPACAYVTGPLGGFTANGKGERFIECDYWSGQMMWEFYQELQSGNGPVFLKLDHLAEETIQTIEQILHTNER
PSRGRFHAGRGTDYRRQMVEMHISEIGFCSGHSASGVYVNARAETTVPGLYAAGDMAAVPHNYMLGAFTYGWFAGQNAAD
YVAGRDHAAVDDEQVAAERTRVLAPLTRERGLAPAQVEYKLRRMVNDYLQPPKVTRKMEIGLQRFDGITEDIEEIKANHP
HELMRAAEVRAIRDCAEMAARASLFRTESRWGLYHHRVDFPHRNDAEWFCHTWLRKGVDGTMRSEKRPVEPYVVPLADDE
RSAYAQLRIREPAARAAAL
>Mature_579_residues
MNTHVLEYDIVVVGGGTAGPMAAIKAKERDPSLRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTREITIANDG
IVDQEAVYAYATHSFATIEQLDRWGVKFEKDGTGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARIAITNRIVATR
VLTDAQGRASGVLGFDCRTADFHVIRAKAVILCCGAAGRLGLPASGYLMGTYENPTNAGDGYAMAYHAGAALANLECFQI
NPLIKDYNGPACAYVTGPLGGFTANGKGERFIECDYWSGQMMWEFYQELQSGNGPVFLKLDHLAEETIQTIEQILHTNER
PSRGRFHAGRGTDYRRQMVEMHISEIGFCSGHSASGVYVNARAETTVPGLYAAGDMAAVPHNYMLGAFTYGWFAGQNAAD
YVAGRDHAAVDDEQVAAERTRVLAPLTRERGLAPAQVEYKLRRMVNDYLQPPKVTRKMEIGLQRFDGITEDIEEIKANHP
HELMRAAEVRAIRDCAEMAARASLFRTESRWGLYHHRVDFPHRNDAEWFCHTWLRKGVDGTMRSEKRPVEPYVVPLADDE
RSAYAQLRIREPAARAAAL

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786942, Length=605, Percent_Identity=24.7933884297521, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1790597, Length=605, Percent_Identity=21.8181818181818, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: 1900 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1360 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 1100 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR015939
- InterPro:   IPR004112 [H]

Pfam domain/function: PF00890 FAD_binding_2; PF02910 Succ_DH_flav_C [H]

EC number: 1.3.99.1 [C]

Molecular weight: Translated: 64181; Mature: 64181

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTHVLEYDIVVVGGGTAGPMAAIKAKERDPSLRVLLLEKANVKRSGAISMGMDGLNNAV
CCCEEEEEEEEEECCCCCCCHHHEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCC
IPGHATPEQYTREITIANDGIVDQEAVYAYATHSFATIEQLDRWGVKFEKDGTGDYAVKK
CCCCCCHHHHCEEEEEECCCCCCCHHEEEEECCCHHHHHHHHHCCCEEECCCCCHHHHHH
VHHMGSYVLPMPEGHDIKKVLYRQLKRARIAITNRIVATRVLTDAQGRASGVLGFDCRTA
HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
DFHVIRAKAVILCCGAAGRLGLPASGYLMGTYENPTNAGDGYAMAYHAGAALANLECFQI
CEEEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHCCEEEEE
NPLIKDYNGPACAYVTGPLGGFTANGKGERFIECDYWSGQMMWEFYQELQSGNGPVFLKL
CCHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
DHLAEETIQTIEQILHTNERPSRGRFHAGRGTDYRRQMVEMHISEIGFCSGHSASGVYVN
HHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE
ARAETTVPGLYAAGDMAAVPHNYMLGAFTYGWFAGQNAADYVAGRDHAAVDDEQVAAERT
CCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHH
RVLAPLTRERGLAPAQVEYKLRRMVNDYLQPPKVTRKMEIGLQRFDGITEDIEEIKANHP
HHHCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCH
HELMRAAEVRAIRDCAEMAARASLFRTESRWGLYHHRVDFPHRNDAEWFCHTWLRKGVDG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
TMRSEKRPVEPYVVPLADDERSAYAQLRIREPAARAAAL
CHHCCCCCCCCEEEEECCCCCCCEEEEEEECCHHHHCCC
>Mature Secondary Structure
MNTHVLEYDIVVVGGGTAGPMAAIKAKERDPSLRVLLLEKANVKRSGAISMGMDGLNNAV
CCCEEEEEEEEEECCCCCCCHHHEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCC
IPGHATPEQYTREITIANDGIVDQEAVYAYATHSFATIEQLDRWGVKFEKDGTGDYAVKK
CCCCCCHHHHCEEEEEECCCCCCCHHEEEEECCCHHHHHHHHHCCCEEECCCCCHHHHHH
VHHMGSYVLPMPEGHDIKKVLYRQLKRARIAITNRIVATRVLTDAQGRASGVLGFDCRTA
HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
DFHVIRAKAVILCCGAAGRLGLPASGYLMGTYENPTNAGDGYAMAYHAGAALANLECFQI
CEEEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHCCEEEEE
NPLIKDYNGPACAYVTGPLGGFTANGKGERFIECDYWSGQMMWEFYQELQSGNGPVFLKL
CCHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
DHLAEETIQTIEQILHTNERPSRGRFHAGRGTDYRRQMVEMHISEIGFCSGHSASGVYVN
HHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE
ARAETTVPGLYAAGDMAAVPHNYMLGAFTYGWFAGQNAADYVAGRDHAAVDDEQVAAERT
CCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHH
RVLAPLTRERGLAPAQVEYKLRRMVNDYLQPPKVTRKMEIGLQRFDGITEDIEEIKANHP
HHHCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCH
HELMRAAEVRAIRDCAEMAARASLFRTESRWGLYHHRVDFPHRNDAEWFCHTWLRKGVDG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
TMRSEKRPVEPYVVPLADDERSAYAQLRIREPAARAAAL
CHHCCCCCCCCEEEEECCCCCCCEEEEEEECCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: ATP; Dithiothreitol; FAD; Fe-S-clusters [C]

Metal ions: Anions; Diphosphate; Fe [C]

Kcat value (1/min): 10000-13000 [C]

Specific activity: 509

Km value (mM): 0.02 {succinate}} 0.4 {fumarate}} 0.3 {ferricyanide}} [C]

Substrates: FAD; Succinate [C]

Specific reaction: FAD + Succinate --> FADH2 + Fumarate [C]

General reaction: Redox reaction [C]

Inhibitor: 5, 5'-Dithiobis (2-nitrobenzoate); Chaotropic reagents [C]

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]