| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351936
Identifier: 115351936
GI number: 115351936
Start: 2065165
End: 2066763
Strand: Direct
Name: 115351936
Synonym: Bamb_1885
Alternate gene names: NA
Gene position: 2065165-2066763 (Clockwise)
Preceding gene: 115351935
Following gene: 115351938
Centisome position: 58.07
GC content: 63.04
Gene sequence:
>1599_bases ATGGACGACCGCACGCAACAGCTCGACCTGACCGCTCCGATCCCAACCGGAAACATCAAGGCCGCAGCCGCGGCGGCCGG CGCAACGTCGGCGGACCTGTGGATGGTCCCCTACGAACAGCTGCACTACGATCCGGCTGACAACATCCGGGCGGTTGATA CCGAATGGGTTGCACACCTGGCCGCGCTGATGCGCGAGAACGGGTACGACAAGGGCTCGCCCCTCCATTGCTACGCCCGG AAGGTTGACGGTAAAGATCTGCTCTACGTTTACAAGGGGCAGCACCGCTATCTCGCGGCGGGACACGTGATCGCAACCGG GAAGGATCTGGGGAAGATCCCGGTCGTCGTCCGCGACGCCAAAAACGTGAACCGCGCCGAAATGGTGATCGACGGCTATC TCAGCAACGACAGCAAACGGTCGTCGCCGCTCGATTTGGCAGGCGTTGTCGCCGAGCTGCGCGACATTCACGGCATGACC CTCGCGGCCATCTGCAAGCGCCTGAATGTCACTGATCAAACAATCCGCGACGTCGGCCTGCTCGAACGGGCACCGGCTGA ACTGCATCAGCTCGTACGCGACGGGCAATGCACCGGCACACTGGCGATCGAAGAGATCCGCCGGCATGGGGGTGAAAAGG CGCTCGAACGCATCGTTGTCGGGATCTCCAAAGCAGCGGAAGCCGGCAAGTCGAAGGTGACGAAGAAGTATCTCGAAGCC GTGCCCCTACTCGATCCGCTTCAGGACACGGCATCACTGGCAGAGCAGACAACATCCGCAAGCGCCACCGCTAGCCCCGA ACCTGTCGCCACGTCGACGGCTGCAGACGTTACTGTCGAGACGCACGCGGCGGCACAAGCAGCCCCGCGCCACACGTCTC CCGCCAAGTTCAGCGAGAAGCAGTCAAAGCAACTTTTGCTGGCGCTGCAGGCTGTCTTGCGCGATGAAGGGTTCGGTAAG CTCGCGCCGGACACAATCCACGCTGTTCACACGGCGCTGTTGCCGATCAGCGATCTGCTTGATGCGAAGCCCGCCGGGAA AGTGTGGCCGGTCACGGAACCGGACGAGAGCGGCGGCTGCCAAGCCGTCGAGACCTTGCGCGGTCCCGAGCGAACCGGTC GGATCAAGGGGCCGCTCGCGCACATTCGCATCGCACAACCGAGACCGGGGGCATGGATTTACGCGATCGAGTACAACACC GGCACCAGCTTTGCGAGCGACCCTTTGAAGGTATCTCCGCAGACGCGCGCAGTGTGGACGCGCGTTCAGGCGATTCGTTC GGGCGCCGCGCGGCTCATCGAGACCATCAAGTCACCGATCCACGGGCAGACGAAGGTAGAGCAGGCGGCGTTTAAGAAGA TTCTCGCGTGGGCGCACGAGATCATCGCTATGCCTGATCCCGATATGACTGTCGAATTCTCGGCAGCCACCGCCAAAGGC GAGCGCCCCGACCTGACGGACGTGTTAACGGCCATCGAGCACAAGCGGCGGATCAAGTCGAACACGGCGCTGCTGGCCGC TGCATTTCCGGCGCAGAAGGTAACGCCCGGTCTCGACCCTGCGTCGGCATGGGCGCTCCCGACTGGAGGTGCGAAATGA
Upstream 100 bases:
>100_bases GTGACGCGAAGCGCGCAGCGGGCATCGAAGCATCAAACGCGATCCACAAAGCGAAGAAGCCTCGCAAGGCTCGCATTGCG GCGACGCGGGAGGTTGCGTA
Downstream 100 bases:
>100_bases CCCCGCGCCCGGCCCTTTCTACCCCACGTCCGCTGCCGCGAAAGCGGGAACACGCGAAGAAGCGCTCGGCCATTGCACTG GCGAGCGTCAACGGCAATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 532; Mature: 532
Protein sequence:
>532_residues MDDRTQQLDLTAPIPTGNIKAAAAAAGATSADLWMVPYEQLHYDPADNIRAVDTEWVAHLAALMRENGYDKGSPLHCYAR KVDGKDLLYVYKGQHRYLAAGHVIATGKDLGKIPVVVRDAKNVNRAEMVIDGYLSNDSKRSSPLDLAGVVAELRDIHGMT LAAICKRLNVTDQTIRDVGLLERAPAELHQLVRDGQCTGTLAIEEIRRHGGEKALERIVVGISKAAEAGKSKVTKKYLEA VPLLDPLQDTASLAEQTTSASATASPEPVATSTAADVTVETHAAAQAAPRHTSPAKFSEKQSKQLLLALQAVLRDEGFGK LAPDTIHAVHTALLPISDLLDAKPAGKVWPVTEPDESGGCQAVETLRGPERTGRIKGPLAHIRIAQPRPGAWIYAIEYNT GTSFASDPLKVSPQTRAVWTRVQAIRSGAARLIETIKSPIHGQTKVEQAAFKKILAWAHEIIAMPDPDMTVEFSAATAKG ERPDLTDVLTAIEHKRRIKSNTALLAAAFPAQKVTPGLDPASAWALPTGGAK
Sequences:
>Translated_532_residues MDDRTQQLDLTAPIPTGNIKAAAAAAGATSADLWMVPYEQLHYDPADNIRAVDTEWVAHLAALMRENGYDKGSPLHCYAR KVDGKDLLYVYKGQHRYLAAGHVIATGKDLGKIPVVVRDAKNVNRAEMVIDGYLSNDSKRSSPLDLAGVVAELRDIHGMT LAAICKRLNVTDQTIRDVGLLERAPAELHQLVRDGQCTGTLAIEEIRRHGGEKALERIVVGISKAAEAGKSKVTKKYLEA VPLLDPLQDTASLAEQTTSASATASPEPVATSTAADVTVETHAAAQAAPRHTSPAKFSEKQSKQLLLALQAVLRDEGFGK LAPDTIHAVHTALLPISDLLDAKPAGKVWPVTEPDESGGCQAVETLRGPERTGRIKGPLAHIRIAQPRPGAWIYAIEYNT GTSFASDPLKVSPQTRAVWTRVQAIRSGAARLIETIKSPIHGQTKVEQAAFKKILAWAHEIIAMPDPDMTVEFSAATAKG ERPDLTDVLTAIEHKRRIKSNTALLAAAFPAQKVTPGLDPASAWALPTGGAK >Mature_532_residues MDDRTQQLDLTAPIPTGNIKAAAAAAGATSADLWMVPYEQLHYDPADNIRAVDTEWVAHLAALMRENGYDKGSPLHCYAR KVDGKDLLYVYKGQHRYLAAGHVIATGKDLGKIPVVVRDAKNVNRAEMVIDGYLSNDSKRSSPLDLAGVVAELRDIHGMT LAAICKRLNVTDQTIRDVGLLERAPAELHQLVRDGQCTGTLAIEEIRRHGGEKALERIVVGISKAAEAGKSKVTKKYLEA VPLLDPLQDTASLAEQTTSASATASPEPVATSTAADVTVETHAAAQAAPRHTSPAKFSEKQSKQLLLALQAVLRDEGFGK LAPDTIHAVHTALLPISDLLDAKPAGKVWPVTEPDESGGCQAVETLRGPERTGRIKGPLAHIRIAQPRPGAWIYAIEYNT GTSFASDPLKVSPQTRAVWTRVQAIRSGAARLIETIKSPIHGQTKVEQAAFKKILAWAHEIIAMPDPDMTVEFSAATAKG ERPDLTDVLTAIEHKRRIKSNTALLAAAFPAQKVTPGLDPASAWALPTGGAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57035; Mature: 57035
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDRTQQLDLTAPIPTGNIKAAAAAAGATSADLWMVPYEQLHYDPADNIRAVDTEWVAHL CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEECCHHHHCCCCCCCCEECCHHHHHHH AALMRENGYDKGSPLHCYARKVDGKDLLYVYKGQHRYLAAGHVIATGKDLGKIPVVVRDA HHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEECEEEECCCCCCCCCEEEECC KNVNRAEMVIDGYLSNDSKRSSPLDLAGVVAELRDIHGMTLAAICKRLNVTDQTIRDVGL CCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH LERAPAELHQLVRDGQCTGTLAIEEIRRHGGEKALERIVVGISKAAEAGKSKVTKKYLEA HHCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPLLDPLQDTASLAEQTTSASATASPEPVATSTAADVTVETHAAAQAAPRHTSPAKFSEK CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCHHHHH QSKQLLLALQAVLRDEGFGKLAPDTIHAVHTALLPISDLLDAKPAGKVWPVTEPDESGGC HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH QAVETLRGPERTGRIKGPLAHIRIAQPRPGAWIYAIEYNTGTSFASDPLKVSPQTRAVWT HHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCEECCCHHHHHH RVQAIRSGAARLIETIKSPIHGQTKVEQAAFKKILAWAHEIIAMPDPDMTVEFSAATAKG HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC ERPDLTDVLTAIEHKRRIKSNTALLAAAFPAQKVTPGLDPASAWALPTGGAK CCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCHHCCCCCCCCCC >Mature Secondary Structure MDDRTQQLDLTAPIPTGNIKAAAAAAGATSADLWMVPYEQLHYDPADNIRAVDTEWVAHL CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEECCHHHHCCCCCCCCEECCHHHHHHH AALMRENGYDKGSPLHCYARKVDGKDLLYVYKGQHRYLAAGHVIATGKDLGKIPVVVRDA HHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEECEEEECCCCCCCCCEEEECC KNVNRAEMVIDGYLSNDSKRSSPLDLAGVVAELRDIHGMTLAAICKRLNVTDQTIRDVGL CCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH LERAPAELHQLVRDGQCTGTLAIEEIRRHGGEKALERIVVGISKAAEAGKSKVTKKYLEA HHCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPLLDPLQDTASLAEQTTSASATASPEPVATSTAADVTVETHAAAQAAPRHTSPAKFSEK CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCHHHHH QSKQLLLALQAVLRDEGFGKLAPDTIHAVHTALLPISDLLDAKPAGKVWPVTEPDESGGC HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH QAVETLRGPERTGRIKGPLAHIRIAQPRPGAWIYAIEYNTGTSFASDPLKVSPQTRAVWT HHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCEECCCHHHHHH RVQAIRSGAARLIETIKSPIHGQTKVEQAAFKKILAWAHEIIAMPDPDMTVEFSAATAKG HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC ERPDLTDVLTAIEHKRRIKSNTALLAAAFPAQKVTPGLDPASAWALPTGGAK CCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA