| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is ylaK [H]
Identifier: 115351854
GI number: 115351854
Start: 1991708
End: 1993528
Strand: Direct
Name: ylaK [H]
Synonym: Bamb_1803
Alternate gene names: 115351854
Gene position: 1991708-1993528 (Clockwise)
Preceding gene: 115351853
Following gene: 115351855
Centisome position: 56.0
GC content: 67.27
Gene sequence:
>1821_bases ATGCCTTTGCCTACCCCCCCCAGCAAGCTCGGCAGCCTGCTGCCGCCCGACGAATACAAGGCGAAAGCGCGGCCCGCGAA AGCCGCGAAGAAATCCGCCGAAGGGGACGCATCCACAGCCGGTGACTACGGTCCGGCCAGCGTGGCCCAACCGATGACCG AAGCCGCGAACACGACCGCACCGCTGCGCGCCGTCGCGTCGTCGGAGCACGACACCGCAAGCACGCCCGCACGCGGCCGC AAGTCCCGGCAGACGGCCGCGTTGCTGCAGCCGATGCCGGCGCCGGCCGTACCGGCGGCACCCGCGGCCCCCGCCGCGCC GGTCGTTGCACGCAACGACAAGCCGGCCGCCGGCAAACCGTCCGCGGCGCCCGCGCGCGATACCGGCGCCGGGACGAAGT CGCGCAGCCGCAAGCCGGCCGAAGCCGAACTGCAGAAGCTGTTCGTGCTCGACACCAACGTGCTGATGCACGACCCGAGC AGCCTCTTCCGCTTCGAGGAACACGACGTCTATCTGCCGATGATGACGCTCGAGGAACTCGACAATCACAAGAAGGGGAT GTCCGAAGTCGCGCGCAACGCGCGCCAGGTGAGCCGCACGCTCGACTCGCTGGTCGCCGACGGCGGCCCGATCTCGGCCG GCATTCCGCTGTCGCGCCTCGGCAGCCGCGAGGCGCTCGGCCGCCTCTACTTCCAGACGAAGCTCGCGGACATCGCGCCG ATCGAAGGCCTGCCCGAAGGCAAGGCCGACAACCAGATCCTCGGCGTCGTGCGCGCGCTGCAGCGCGACCGGCCGGACCG CCAGGTCGTGCTGGTGTCGAAAGACATCAACATGCGGATCAAGGCGCACGCGCTCGGCCTGCCCGCTGAAGACTACTTCA ACGACCAGGTACTCGAGGACAAGGATCTCCTCTACAACGGCGTGCGCGAGCTGCCGCAGGATTTCTGGACCAAGCATGCG AAGGGCATGGAGAGTTGGCAGGACACGAAGACGGGCACCACGTACTACCGCGTGACCGGCCCGCTCGTCGCGTCGATGCT CGTCAACGAGTTCGTCTATCTCGAGCCACAGAACGGCGAGCCGACGTTCCACGCGATCGTCCGCGAACTGAACGGCAAGA CGGCGCTGCTGCAGACGCTGCGCGACTACAGCCACCACAAGAACAACGTGTGGGGCATCACCGCGCGCAACCGCGAGCAG AATTTCGCGCTGAACCTGCTGATGAACCCCGAGATCGACTTCGTCACGCTGCTTGGCCAGGCCGGCACCGGCAAGACGCT CGTCGCGCTCGCGGCCGGCCTCGCGCAGGTGCTCGACGACAAGCGCTACAACGAGATCATCGTGACGCGCGCGACCGTGC CCGTCGGCGAGGACATCGGTTTCCTGCCCGGCACCGAGGAAGAGAAGATGCAGCCGTGGATGGGTGCATTCGACGACAAC CTCGAGGTGCTGCAGAAAACCGACGACGCGGCCGGCGAATGGGGCCGTGCGGCGACGCAGGAGCTGATCCGTTCGCGCCT GAAGGTGAAGAGCATGAACTTCATGCGCGGCCGCACGTTCGTCGACAAGTACCTGATCATCGACGAAGCGCAGAACCTGA CGCCGAAGCAGATGAAGACGCTCGTGACGCGCGCGGGCCCCGGCACGAAGATCGTGTGCCTCGGCAACATCGCGCAGATC GACACGCCTTACCTGACCGAAGGCAGCTCGGGCCTGACCTACGTCGTCGACCGCTTCAAGGGCTGGGGCCACAGCGGCCA CGTGACGCTCGCGCGCGGCGAACGCTCGCGGCTCGCCGACTACGCGTCGGACATCCTGTAA
Upstream 100 bases:
>100_bases AATTCCTGTGCGCCACCGCGCGCAAACTGCATGCGTCTACGTCACGCAGGATGCGATCAGCGGCGCACTTCATGCGACAC GATTCCTCCCGAGGGACACC
Downstream 100 bases:
>100_bases CGCGCGACCGGCTCCTCGCCGGCCTTCGACGCCACGCGGCGCTCCGTTTCCGGAGCGCCGTTTTTATTTTTGGGGTCGGA AACGTTGGTCATACTTCGTA
Product: PhoH family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MPLPTPPSKLGSLLPPDEYKAKARPAKAAKKSAEGDASTAGDYGPASVAQPMTEAANTTAPLRAVASSEHDTASTPARGR KSRQTAALLQPMPAPAVPAAPAAPAAPVVARNDKPAAGKPSAAPARDTGAGTKSRSRKPAEAELQKLFVLDTNVLMHDPS SLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNARQVSRTLDSLVADGGPISAGIPLSRLGSREALGRLYFQTKLADIAP IEGLPEGKADNQILGVVRALQRDRPDRQVVLVSKDINMRIKAHALGLPAEDYFNDQVLEDKDLLYNGVRELPQDFWTKHA KGMESWQDTKTGTTYYRVTGPLVASMLVNEFVYLEPQNGEPTFHAIVRELNGKTALLQTLRDYSHHKNNVWGITARNREQ NFALNLLMNPEIDFVTLLGQAGTGKTLVALAAGLAQVLDDKRYNEIIVTRATVPVGEDIGFLPGTEEEKMQPWMGAFDDN LEVLQKTDDAAGEWGRAATQELIRSRLKVKSMNFMRGRTFVDKYLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQI DTPYLTEGSSGLTYVVDRFKGWGHSGHVTLARGERSRLADYASDIL
Sequences:
>Translated_606_residues MPLPTPPSKLGSLLPPDEYKAKARPAKAAKKSAEGDASTAGDYGPASVAQPMTEAANTTAPLRAVASSEHDTASTPARGR KSRQTAALLQPMPAPAVPAAPAAPAAPVVARNDKPAAGKPSAAPARDTGAGTKSRSRKPAEAELQKLFVLDTNVLMHDPS SLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNARQVSRTLDSLVADGGPISAGIPLSRLGSREALGRLYFQTKLADIAP IEGLPEGKADNQILGVVRALQRDRPDRQVVLVSKDINMRIKAHALGLPAEDYFNDQVLEDKDLLYNGVRELPQDFWTKHA KGMESWQDTKTGTTYYRVTGPLVASMLVNEFVYLEPQNGEPTFHAIVRELNGKTALLQTLRDYSHHKNNVWGITARNREQ NFALNLLMNPEIDFVTLLGQAGTGKTLVALAAGLAQVLDDKRYNEIIVTRATVPVGEDIGFLPGTEEEKMQPWMGAFDDN LEVLQKTDDAAGEWGRAATQELIRSRLKVKSMNFMRGRTFVDKYLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQI DTPYLTEGSSGLTYVVDRFKGWGHSGHVTLARGERSRLADYASDIL >Mature_605_residues PLPTPPSKLGSLLPPDEYKAKARPAKAAKKSAEGDASTAGDYGPASVAQPMTEAANTTAPLRAVASSEHDTASTPARGRK SRQTAALLQPMPAPAVPAAPAAPAAPVVARNDKPAAGKPSAAPARDTGAGTKSRSRKPAEAELQKLFVLDTNVLMHDPSS LFRFEEHDVYLPMMTLEELDNHKKGMSEVARNARQVSRTLDSLVADGGPISAGIPLSRLGSREALGRLYFQTKLADIAPI EGLPEGKADNQILGVVRALQRDRPDRQVVLVSKDINMRIKAHALGLPAEDYFNDQVLEDKDLLYNGVRELPQDFWTKHAK GMESWQDTKTGTTYYRVTGPLVASMLVNEFVYLEPQNGEPTFHAIVRELNGKTALLQTLRDYSHHKNNVWGITARNREQN FALNLLMNPEIDFVTLLGQAGTGKTLVALAAGLAQVLDDKRYNEIIVTRATVPVGEDIGFLPGTEEEKMQPWMGAFDDNL EVLQKTDDAAGEWGRAATQELIRSRLKVKSMNFMRGRTFVDKYLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQID TPYLTEGSSGLTYVVDRFKGWGHSGHVTLARGERSRLADYASDIL
Specific function: Unknown
COG id: COG1875
COG function: function code T; Predicted ATPase related to phosphate starvation-inducible protein PhoH
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PINc domain [H]
Homologues:
Organism=Escherichia coli, GI1787257, Length=191, Percent_Identity=36.1256544502618, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI145693103, Length=162, Percent_Identity=37.6543209876543, Blast_Score=89, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 - InterPro: IPR006596 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 66030; Mature: 65899
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPTPPSKLGSLLPPDEYKAKARPAKAAKKSAEGDASTAGDYGPASVAQPMTEAANTTA CCCCCCHHHHCCCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCH PLRAVASSEHDTASTPARGRKSRQTAALLQPMPAPAVPAAPAAPAAPVVARNDKPAAGKP HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC SAAPARDTGAGTKSRSRKPAEAELQKLFVLDTNVLMHDPSSLFRFEEHDVYLPMMTLEEL CCCCCCCCCCCCCCCCCCCHHHHHHEEHEEECCEEEECCHHHHEECCCCEEEHHHHHHHH DNHKKGMSEVARNARQVSRTLDSLVADGGPISAGIPLSRLGSREALGRLYFQTKLADIAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC IEGLPEGKADNQILGVVRALQRDRPDRQVVLVSKDINMRIKAHALGLPAEDYFNDQVLED CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEECCCHHHHCCCCCCCH KDLLYNGVRELPQDFWTKHAKGMESWQDTKTGTTYYRVTGPLVASMLVNEFVYLEPQNGE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHEEEEECCCCC PTFHAIVRELNGKTALLQTLRDYSHHKNNVWGITARNREQNFALNLLMNPEIDFVTLLGQ HHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECC AGTGKTLVALAAGLAQVLDDKRYNEIIVTRATVPVGEDIGFLPGTEEEKMQPWMGAFDDN CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHCCHHCCCCCC LEVLQKTDDAAGEWGRAATQELIRSRLKVKSMNFMRGRTFVDKYLIIDEAQNLTPKQMKT HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCCCHHHHHH LVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWGHSGHVTLARGERSRLAD HHHCCCCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCHHHHHH YASDIL HHHHCC >Mature Secondary Structure PLPTPPSKLGSLLPPDEYKAKARPAKAAKKSAEGDASTAGDYGPASVAQPMTEAANTTA CCCCCHHHHCCCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCH PLRAVASSEHDTASTPARGRKSRQTAALLQPMPAPAVPAAPAAPAAPVVARNDKPAAGKP HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC SAAPARDTGAGTKSRSRKPAEAELQKLFVLDTNVLMHDPSSLFRFEEHDVYLPMMTLEEL CCCCCCCCCCCCCCCCCCCHHHHHHEEHEEECCEEEECCHHHHEECCCCEEEHHHHHHHH DNHKKGMSEVARNARQVSRTLDSLVADGGPISAGIPLSRLGSREALGRLYFQTKLADIAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC IEGLPEGKADNQILGVVRALQRDRPDRQVVLVSKDINMRIKAHALGLPAEDYFNDQVLED CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEECCCHHHHCCCCCCCH KDLLYNGVRELPQDFWTKHAKGMESWQDTKTGTTYYRVTGPLVASMLVNEFVYLEPQNGE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHEEEEECCCCC PTFHAIVRELNGKTALLQTLRDYSHHKNNVWGITARNREQNFALNLLMNPEIDFVTLLGQ HHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECC AGTGKTLVALAAGLAQVLDDKRYNEIIVTRATVPVGEDIGFLPGTEEEKMQPWMGAFDDN CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHCCHHCCCCCC LEVLQKTDDAAGEWGRAATQELIRSRLKVKSMNFMRGRTFVDKYLIIDEAQNLTPKQMKT HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCCCHHHHHH LVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWGHSGHVTLARGERSRLAD HHHCCCCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCHHHHHH YASDIL HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]