| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is bcp [H]
Identifier: 115351853
GI number: 115351853
Start: 1990914
End: 1991375
Strand: Direct
Name: bcp [H]
Synonym: Bamb_1802
Alternate gene names: 115351853
Gene position: 1990914-1991375 (Clockwise)
Preceding gene: 115351852
Following gene: 115351854
Centisome position: 55.98
GC content: 60.39
Gene sequence:
>462_bases GTGTCCGTCGAAGTTGACCGTCAAGTTCCCGATTTCACCGCACCGGCTACGGGCGGCGACATTTCGCTGTCCGGCCTGAA GGGCAAGAAGCTCGTCCTGTATTTCTATCCGAAGGACAACACGCCGGGCTGCACGACCGAAGGCCTGCAGTTCCGCGATC TCTATCCGAAGTTCAAGAAGGCTGGCGCCGAAGTCATCGGCGTGTCGCGCGACAGCCTGCGCTCGCATGACAATTTCAAG GCAAAGCTCGAGCTGCCGTTCCCGCTGATCTCCGATGCCGACGAAGCGCTGTGCGCGCTGTTCGACGTCATCAAGATGAA GAAAATGTATGGCAAGGAAGTGCGCGGAATCGAGCGCTCGACGTTCCTGATCGACGCCGACGGCGTGCTCCGCCAGGCAT GGCGCGGCATCAAGGTGCCCGGCCACGTGGACGACGTGCTAAGTGCTGTACAAGCGCTTTGA
Upstream 100 bases:
>100_bases TGCGCGCCGGCACCGCCCGCCCCGCCCTCGCGGCGTGCCGCAGCGCCCCCGCCGAACCGCGCCGCCCGAGCGGCGCTTTC CATAACAACAGGAGAAACAC
Downstream 100 bases:
>100_bases GCCGCGCTATATTGGGCCGCAATGAATGCCAGTTCGCCCCATATTTCTCGTAGCTGCGCCGGTGCCCGTTGCGTTGCTTG CCGGCACCTGACGCGCATCA
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MSVEVDRQVPDFTAPATGGDISLSGLKGKKLVLYFYPKDNTPGCTTEGLQFRDLYPKFKKAGAEVIGVSRDSLRSHDNFK AKLELPFPLISDADEALCALFDVIKMKKMYGKEVRGIERSTFLIDADGVLRQAWRGIKVPGHVDDVLSAVQAL
Sequences:
>Translated_153_residues MSVEVDRQVPDFTAPATGGDISLSGLKGKKLVLYFYPKDNTPGCTTEGLQFRDLYPKFKKAGAEVIGVSRDSLRSHDNFK AKLELPFPLISDADEALCALFDVIKMKKMYGKEVRGIERSTFLIDADGVLRQAWRGIKVPGHVDDVLSAVQAL >Mature_152_residues SVEVDRQVPDFTAPATGGDISLSGLKGKKLVLYFYPKDNTPGCTTEGLQFRDLYPKFKKAGAEVIGVSRDSLRSHDNFKA KLELPFPLISDADEALCALFDVIKMKKMYGKEVRGIERSTFLIDADGVLRQAWRGIKVPGHVDDVLSAVQAL
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI32189392, Length=164, Percent_Identity=34.7560975609756, Blast_Score=70, Evalue=9e-13, Organism=Homo sapiens, GI4505591, Length=165, Percent_Identity=33.9393939393939, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI32455266, Length=165, Percent_Identity=33.9393939393939, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI32455264, Length=165, Percent_Identity=33.9393939393939, Blast_Score=69, Evalue=2e-12, Organism=Escherichia coli, GI1788825, Length=143, Percent_Identity=38.4615384615385, Blast_Score=104, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6322180, Length=144, Percent_Identity=32.6388888888889, Blast_Score=63, Evalue=2e-11, Organism=Drosophila melanogaster, GI17738015, Length=164, Percent_Identity=35.9756097560976, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 16862; Mature: 16730
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVEVDRQVPDFTAPATGGDISLSGLKGKKLVLYFYPKDNTPGCTTEGLQFRDLYPKFKK CCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH AGAEVIGVSRDSLRSHDNFKAKLELPFPLISDADEALCALFDVIKMKKMYGKEVRGIERS CCCEEEECCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC TFLIDADGVLRQAWRGIKVPGHVDDVLSAVQAL EEEEECCHHHHHHHCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure SVEVDRQVPDFTAPATGGDISLSGLKGKKLVLYFYPKDNTPGCTTEGLQFRDLYPKFKK CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH AGAEVIGVSRDSLRSHDNFKAKLELPFPLISDADEALCALFDVIKMKKMYGKEVRGIERS CCCEEEECCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC TFLIDADGVLRQAWRGIKVPGHVDDVLSAVQAL EEEEECCHHHHHHHCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12704232 [H]