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The map label for this gene is ydhO [H]

Identifier: 115351855

GI number: 115351855

Start: 1993765

End: 1994829

Strand: Direct

Name: ydhO [H]

Synonym: Bamb_1804

Alternate gene names: 115351855

Gene position: 1993765-1994829 (Clockwise)

Preceding gene: 115351854

Following gene: 115351866

Centisome position: 56.06

GC content: 72.11

Gene sequence:

>1065_bases
ATGCTTCGAATCTGGGTTCCCGTCGCCGTCGTTTCACTGCTCGCGGCCTGCTCCAGCGTGCCGCCGCAGTCGGCATCGCG
CACCTCCGGCATGAAGATCACGACCCCGCGCGCGTTCCCGCCGCCCGCCAATTTCCCGAAATTCGTCGATCACAGCGTCG
GCCAGGAAGAAATCTCGATCCAGGCGATGAGCCTCGTCGGCGTGCCGTATCGCTGGGGCGGCAACACGCCCACGAGCGGC
TTCGACTGCAGCGGGCTCGTGCGCTACGTGATCGGCCGCGCGGCCGACGTGAACCTGCCGCGCACGACCGCCGACATGAG
CAGCCGCGGCGTGTCGATCGACCCCGAAGAGGTAGCGCCGGGCGACCTGATCTTCTTCAATACGACCGGACGCCCGCACT
CGCACGTCGGCATCTATGTCGGCAAGCTGCGCTTCGTCAATGCGCCGTCGACCGGCGGCACCGTGCGGCTCGATTATTTG
ACGAACCCGTACTGGGCCAAGCGCTTCGACGGCATTCGCCGTGTCGCGCCGCCGCGCGGCACACCGGCACCGTTCGATAC
GCCGACCTACGAGGCCCGGCGCGACGCGCCGCCGGCCGCACCAGCCGCTGTCGTGACCGCCGCCGCGCCACGGCAGCCCG
CCTATGCCGCTGCGCAAGCCAGCGCGGCCCCAGCTCCCGCTCCGGTCGCGCCAGCCCCGGCGGTCGTATCGACCGCTGCG
GTGGCGCCGGCAGCCGCGCCTGCCGCCGATCCGTACGAACCGCCGCCGTCGCGCATGCAGGCCGCCCGGCAGCAGGCAAG
CTCCACGAACGGCGACATGATCGCCCCGACCGCGAATGCAGCGCCTGCCGGCCCGGCAGAGGTCGGCACGCAGATTCCGA
CGACGGCGCTGACCGCCGCCCAGGCGGCCGCGTTCGACGACGAACCGCCGCCCGCCGCCGCGCCGTCGCCGCGCGCCATC
GAGCCCGCGCAGGTGTGGCGTGCGTCGACGCAATCCGCGCCCGTCAGCGCGCGCACCGGCACCGCGGACGATCCGATCGC
CCGCTTCGCGAACGGCAGTTACTGA

Upstream 100 bases:

>100_bases
AATTCTCAGGAATGGTTGCCTAAGCCCCGCCGGAACGTCTACCATCGGGTCTGTCTGTTGTCATACGATTGGCGAGCGCG
CCGCGCTCGTCCGCCTTGCC

Downstream 100 bases:

>100_bases
CGCGGTTCATCGTCGACGGCAACCGCGTCGTTCGCCGCACTTTTCCCGACCACCAAAGAAAATGCGCCGCAACCTTTCGG
TTGGCGGCGCATTTCGTGTC

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MLRIWVPVAVVSLLAACSSVPPQSASRTSGMKITTPRAFPPPANFPKFVDHSVGQEEISIQAMSLVGVPYRWGGNTPTSG
FDCSGLVRYVIGRAADVNLPRTTADMSSRGVSIDPEEVAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAPPRGTPAPFDTPTYEARRDAPPAAPAAVVTAAAPRQPAYAAAQASAAPAPAPVAPAPAVVSTAA
VAPAAAPAADPYEPPPSRMQAARQQASSTNGDMIAPTANAAPAGPAEVGTQIPTTALTAAQAAAFDDEPPPAAAPSPRAI
EPAQVWRASTQSAPVSARTGTADDPIARFANGSY

Sequences:

>Translated_354_residues
MLRIWVPVAVVSLLAACSSVPPQSASRTSGMKITTPRAFPPPANFPKFVDHSVGQEEISIQAMSLVGVPYRWGGNTPTSG
FDCSGLVRYVIGRAADVNLPRTTADMSSRGVSIDPEEVAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAPPRGTPAPFDTPTYEARRDAPPAAPAAVVTAAAPRQPAYAAAQASAAPAPAPVAPAPAVVSTAA
VAPAAAPAADPYEPPPSRMQAARQQASSTNGDMIAPTANAAPAGPAEVGTQIPTTALTAAQAAAFDDEPPPAAAPSPRAI
EPAQVWRASTQSAPVSARTGTADDPIARFANGSY
>Mature_354_residues
MLRIWVPVAVVSLLAACSSVPPQSASRTSGMKITTPRAFPPPANFPKFVDHSVGQEEISIQAMSLVGVPYRWGGNTPTSG
FDCSGLVRYVIGRAADVNLPRTTADMSSRGVSIDPEEVAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAPPRGTPAPFDTPTYEARRDAPPAAPAAVVTAAAPRQPAYAAAQASAAPAPAPVAPAPAVVSTAA
VAPAAAPAADPYEPPPSRMQAARQQASSTNGDMIAPTANAAPAGPAEVGTQIPTTALTAAQAAAFDDEPPPAAAPSPRAI
EPAQVWRASTQSAPVSARTGTADDPIARFANGSY

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=41.8032786885246, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1786421, Length=130, Percent_Identity=37.6923076923077, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788501, Length=176, Percent_Identity=33.5227272727273, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=42.0168067226891, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 36458; Mature: 36458

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIWVPVAVVSLLAACSSVPPQSASRTSGMKITTPRAFPPPANFPKFVDHSVGQEEISI
CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCHHHHEE
QAMSLVGVPYRWGGNTPTSGFDCSGLVRYVIGRAADVNLPRTTADMSSRGVSIDPEEVAP
EEEEEECCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHCCC
GDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAPPRG
CCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
TPAPFDTPTYEARRDAPPAAPAAVVTAAAPRQPAYAAAQASAAPAPAPVAPAPAVVSTAA
CCCCCCCCCCHHHCCCCCCCCHHEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHH
VAPAAAPAADPYEPPPSRMQAARQQASSTNGDMIAPTANAAPAGPAEVGTQIPTTALTAA
HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHCCCCCHHHHHHH
QAAAFDDEPPPAAAPSPRAIEPAQVWRASTQSAPVSARTGTADDPIARFANGSY
HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MLRIWVPVAVVSLLAACSSVPPQSASRTSGMKITTPRAFPPPANFPKFVDHSVGQEEISI
CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCHHHHEE
QAMSLVGVPYRWGGNTPTSGFDCSGLVRYVIGRAADVNLPRTTADMSSRGVSIDPEEVAP
EEEEEECCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHCCC
GDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAPPRG
CCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
TPAPFDTPTYEARRDAPPAAPAAVVTAAAPRQPAYAAAQASAAPAPAPVAPAPAVVSTAA
CCCCCCCCCCHHHCCCCCCCCHHEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHH
VAPAAAPAADPYEPPPSRMQAARQQASSTNGDMIAPTANAAPAGPAEVGTQIPTTALTAA
HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHCCCCCHHHHHHH
QAAAFDDEPPPAAAPSPRAIEPAQVWRASTQSAPVSARTGTADDPIARFANGSY
HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]