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The map label for this gene is arnD [H]

Identifier: 115351852

GI number: 115351852

Start: 1989910

End: 1990806

Strand: Direct

Name: arnD [H]

Synonym: Bamb_1801

Alternate gene names: 115351852

Gene position: 1989910-1990806 (Clockwise)

Preceding gene: 115351851

Following gene: 115351853

Centisome position: 55.95

GC content: 67.34

Gene sequence:

>897_bases
TTGGCTCGTATCGTCCTCAAGATCGACGTCGACACGCTGCGCGGCACGCGCGAAGGCGTGCCGAACCTCGCGCGCATCTT
CGACCGCTTCAGTGCGCGCGCGACCTTCCTCTTCAGCCTCGGGCCCGATCACACCGGCTGGGCGCTGCGGCGCGTGTTCC
GCCCCGGCTTCCTGAAGAAGGTGTCGCGCACGTCGGTGGTCGAGCATTACGGCGTGAAGCAGCTGATGTACGGCGTGCTG
CTGCCGGGCCCCGACATCGGCCGCCGTGCGATCGCCGACATGCGCGCGATCCACGAGGCCGGCTTCGAATGCGGGATCCA
TACGTGGGATCACGTGTACTGGCAGGACAACGTGCGCGTGCGCGATCGCGACTGGACCGCGCGTGAAATGCAGAAGAGCC
ACGCGCGCTTCATCGACATCTTCGGCGCACCGCCCGTCACGCATGGCGCGGCCGGCTGGCAGATGAACGACGCCGCATTC
GAGCAGATCGACGCATGGGGGATGCGCTACGCATCCGACGGTCGCGGCCATTCGCCGTACCTGCCCGTGGTCGGCGGCCG
CACGCTGTCGCACGTGCAGATGCCGACCACGCTGCCGACGCTCGACGAAGTGCTCGGCATCGACGGCATCGACACGCACA
ACGTCGCCGCGCACATCCTGAAGTTCACGCAAGCCAATCCGCACGACCAGGTGTTCACGCTGCATGCGGAACTGGAAGGC
CAGAAGCTCGCGCCGGTGTTCGAACAGCTGCTCGCCGGCTGGCGCGCGCAGGGCCATACGTTTGCGACGATGGGCGACTA
CCACGCGACGCTGGACCGCGACTCGCTGCCATCGTACCCTGTCACGTGGGGCGAAATCCCCGGCCGCTCCGGCGAACTGA
TCGTCCAGCCCGACTGA

Upstream 100 bases:

>100_bases
ATCGACGTTCGACGACGCACTGCGCAAGATCTTCGAAGCGTATCGCGGCCATGTCGCCGACGCGCGCGCGCTGGTCGAGC
AGAACTGACGGGACGCTCGC

Downstream 100 bases:

>100_bases
GCGTGCGTGCGCGCCGGCACCGCCCGCCCCGCCCTCGCGGCGTGCCGCAGCGCCCCCGCCGAACCGCGCCGCCCGAGCGG
CGCTTTCCATAACAACAGGA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MARIVLKIDVDTLRGTREGVPNLARIFDRFSARATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVEHYGVKQLMYGVL
LPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRVRDRDWTAREMQKSHARFIDIFGAPPVTHGAAGWQMNDAAF
EQIDAWGMRYASDGRGHSPYLPVVGGRTLSHVQMPTTLPTLDEVLGIDGIDTHNVAAHILKFTQANPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD

Sequences:

>Translated_298_residues
MARIVLKIDVDTLRGTREGVPNLARIFDRFSARATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVEHYGVKQLMYGVL
LPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRVRDRDWTAREMQKSHARFIDIFGAPPVTHGAAGWQMNDAAF
EQIDAWGMRYASDGRGHSPYLPVVGGRTLSHVQMPTTLPTLDEVLGIDGIDTHNVAAHILKFTQANPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD
>Mature_297_residues
ARIVLKIDVDTLRGTREGVPNLARIFDRFSARATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVEHYGVKQLMYGVLL
PGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRVRDRDWTAREMQKSHARFIDIFGAPPVTHGAAGWQMNDAAFE
QIDAWGMRYASDGRGHSPYLPVVGGRTLSHVQMPTTLPTLDEVLGIDGIDTHNVAAHILKFTQANPHDQVFTLHAELEGQ
KLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=35.5704697986577, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33396; Mature: 33265

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIVLKIDVDTLRGTREGVPNLARIFDRFSARATFLFSLGPDHTGWALRRVFRPGFLKK
CCEEEEEEEHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGVKQLMYGVLLPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRV
HHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEE
RDRDWTAREMQKSHARFIDIFGAPPVTHGAAGWQMNDAAFEQIDAWGMRYASDGRGHSPY
ECCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCEECCCCCCCCCC
LPVVGGRTLSHVQMPTTLPTLDEVLGIDGIDTHNVAAHILKFTQANPHDQVFTLHAELEG
CEEECCCCCCEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD
CCHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
ARIVLKIDVDTLRGTREGVPNLARIFDRFSARATFLFSLGPDHTGWALRRVFRPGFLKK
CEEEEEEEHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGVKQLMYGVLLPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRV
HHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEE
RDRDWTAREMQKSHARFIDIFGAPPVTHGAAGWQMNDAAFEQIDAWGMRYASDGRGHSPY
ECCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCEECCCCCCCCCC
LPVVGGRTLSHVQMPTTLPTLDEVLGIDGIDTHNVAAHILKFTQANPHDQVFTLHAELEG
CEEECCCCCCEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD
CCHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA