Click here to switch to the map view.

The map label for this gene is arnA [H]

Identifier: 115351851

GI number: 115351851

Start: 1988845

End: 1989897

Strand: Direct

Name: arnA [H]

Synonym: Bamb_1800

Alternate gene names: 115351851

Gene position: 1988845-1989897 (Clockwise)

Preceding gene: 115351850

Following gene: 115351852

Centisome position: 55.92

GC content: 61.25

Gene sequence:

>1053_bases
ATGAAAGCAAAAAAAGTCCTGATCCTGGGTGTGAACGGCTTCATCGGCCATCACCTGTCGAAGCGCATTCTTGAAACCAC
CGATTGGGAAGTGTTCGGCATGGACATGCAGACCGATCGGCTGGGCGACCTCGTCAACCACGAGCGGATGCACTTCTTCG
AAGGCGACATCACGATCAACAAGGAGTGGGTCGAGTATCACGTGAAGAAGTGCGACGTGATCCTGCCGCTCGTGGCGATC
GCGACGCCCGCGACCTACGTCAAGCAGCCGCTGCGCGTGTTCGAGCTCGACTTCGAGGCGAACCTGCCGATCGTGCGTTC
GGCTGTCAAGTACGGCAAGCACCTCGTGTTCCCGTCGACCTCCGAGGTCTACGGCATGTGCTCGGACGAGGAGTTCGATC
CGGACGCATCGGCGCTCACCTACGGCCCGATCAACAAGCCGCGCTGGATCTACGCGTGCTCGAAGCAGCTGATGGACCGC
GTGATCTGGGGCTACGGGATGGAAGGCCTGAACTTCACGCTGTTCCGCCCGTTCAACTGGATCGGCCCGGGCCTCGACTC
GATCTACACGCCGAAGGAAGGCAGCTCGCGCGTCGTCACGCAGTTCCTCGGCCACATCGTGCGCGGCGAGAACATCAGCC
TCGTCGACGGCGGCTCGCAGAAGCGCGCGTTCACCGACATCGACGACGGCATCAGCGCGCTGATGAAGATCATCGACAAC
AAGAACGGCGTCGCGTCGGGCAAGATCTACAACATCGGGAATCCGAAGAATAACTTCTCGGTTCGCGAGCTCGCGCACAA
GATGCTCGAACTGGCCGCCGAATACCCGGAATACGCCGGCTCCGCGAAGCAGGTGCAGCTCGTCGAAACGACGTCGGGCG
CCTACTACGGCAACGGCTATCAAGACGTGCAGAACCGCGTGCCGAAGATCGACAACACGATGCAGGAACTCGCATGGGCG
CCGCAATCGACGTTCGACGACGCACTGCGCAAGATCTTCGAAGCGTATCGCGGCCATGTCGCCGACGCGCGCGCGCTGGT
CGAGCAGAACTGA

Upstream 100 bases:

>100_bases
GCGCCCTATCCATTCTCGAGCTGTGGCAGCAGCGCGACGGTAGCGAAACCGTCGTGACGCCCGCGGAATTCGCGCAGTTC
ATTCATTCTTCCCGTCATTC

Downstream 100 bases:

>100_bases
CGGGACGCTCGCTTGGCTCGTATCGTCCTCAAGATCGACGTCGACACGCTGCGCGGCACGCGCGAAGGCGTGCCGAACCT
CGCGCGCATCTTCGACCGCT

Product: NAD-dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: UDP-4-amino-4-deoxy-L-arabinose formyltransferase; ArnAFT; UDP-L-Ara4N formyltransferase; UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; ArnADH; UDP-GlcUA decarboxylase; UDP-glucuronic acid dehydrogenase [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVNHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI
ATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCSDEEFDPDASALTYGPINKPRWIYACSKQLMDR
VIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTDIDDGISALMKIIDN
KNGVASGKIYNIGNPKNNFSVRELAHKMLELAAEYPEYAGSAKQVQLVETTSGAYYGNGYQDVQNRVPKIDNTMQELAWA
PQSTFDDALRKIFEAYRGHVADARALVEQN

Sequences:

>Translated_350_residues
MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVNHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI
ATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCSDEEFDPDASALTYGPINKPRWIYACSKQLMDR
VIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTDIDDGISALMKIIDN
KNGVASGKIYNIGNPKNNFSVRELAHKMLELAAEYPEYAGSAKQVQLVETTSGAYYGNGYQDVQNRVPKIDNTMQELAWA
PQSTFDDALRKIFEAYRGHVADARALVEQN
>Mature_350_residues
MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVNHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI
ATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCSDEEFDPDASALTYGPINKPRWIYACSKQLMDR
VIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTDIDDGISALMKIIDN
KNGVASGKIYNIGNPKNNFSVRELAHKMLELAAEYPEYAGSAKQVQLVETTSGAYYGNGYQDVQNRVPKIDNTMQELAWA
PQSTFDDALRKIFEAYRGHVADARALVEQN

Specific function: Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabin

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the sugar epimerase family. UDP-glucuronic acid decarboxylase subfamily [H]

Homologues:

Organism=Homo sapiens, GI42516563, Length=341, Percent_Identity=26.6862170087977, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI7657641, Length=351, Percent_Identity=24.5014245014245, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1788589, Length=339, Percent_Identity=55.4572271386431, Blast_Score=385, Evalue=1e-108,
Organism=Caenorhabditis elegans, GI17539532, Length=344, Percent_Identity=24.7093023255814, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21356223, Length=349, Percent_Identity=24.6418338108883, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021168
- InterPro:   IPR001509
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase; PF02911 Formyl_trans_C; PF00551 Formyl_trans_N [H]

EC number: =2.1.2.13; =1.1.1.305 [H]

Molecular weight: Translated: 39427; Mature: 39427

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVNHERMHFFEGDITIN
CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCHHEEEECCEEEC
KEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHEEEECCCCCCHHHHHHHHHCCEEECCCC
SEVYGMCSDEEFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNW
HHHEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
IGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTDIDDGISALMKIIDN
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC
KNGVASGKIYNIGNPKNNFSVRELAHKMLELAAEYPEYAGSAKQVQLVETTSGAYYGNGY
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
QDVQNRVPKIDNTMQELAWAPQSTFDDALRKIFEAYRGHVADARALVEQN
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVNHERMHFFEGDITIN
CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCHHEEEECCEEEC
KEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHEEEECCCCCCHHHHHHHHHCCEEECCCC
SEVYGMCSDEEFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNW
HHHEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
IGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTDIDDGISALMKIIDN
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC
KNGVASGKIYNIGNPKNNFSVRELAHKMLELAAEYPEYAGSAKQVQLVETTSGAYYGNGY
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
QDVQNRVPKIDNTMQELAWAPQSTFDDALRKIFEAYRGHVADARALVEQN
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA