| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351751
Identifier: 115351751
GI number: 115351751
Start: 1881026
End: 1881691
Strand: Direct
Name: 115351751
Synonym: Bamb_1699
Alternate gene names: NA
Gene position: 1881026-1881691 (Clockwise)
Preceding gene: 115351749
Following gene: 115351761
Centisome position: 52.89
GC content: 66.52
Gene sequence:
>666_bases ATGCGGGACATCAACATCGAATGGCTGACGCGCGCCGCCGAATTCGACCATCTGTTCCAGACGCGCTGGCTCGGCGAGCG CTTCTTCCATCTGCCCGGCGACATGCTCGCCCTGCAGGAACTGATCTGGCGCGCGCGTCCCGACTGCATCGTGCAGACCG GCATCGCGGCGGGCGGCGGCGTCGTATTCTCCGCGTCGATGCTGGAATTGACGGGTGGCCACGGCCGTGTGGTCGCGATC GAACCGCGCCTGCGCGACGAGGTCAGGCAGCGCCTGCAATCGCACCGGCTCGCCCATCGCATGGTGCTGATCGAAGGCGA ATCGTGCGCAACCGACACGCTCGCATCGGTACGCGCGCGGATCGGCGACGGCGCGCGCGTGATGGCGATCCTCGATCTCA CGCATACGCACGCGCACGTGCTGCGCGAACTCGCCTGCTATGCGCCGCTCGTGACGCCCGGCAGCTACGCGATCGTGATG GATACCATCATGGAGTATCTGCCCGAGTCGATGTTCGACGGCAAGCCGTACGGCAGAGGCAACAACCCGGCCACGGCCGT GCATGCGTTTCTCGCCGGCGACGACCGGTTCGAAGTCGACCACGACATCGAGGACCGCGTGCTCATGACGCTGTCGCCAG GCGGCTTCCTGAAGCGAGTGCGCTGA
Upstream 100 bases:
>100_bases CGCCGGCGCGATGTTCCAGTACCGGTGAAGCCACGGTTCCAGCGTTTTCACGTCATTCCTACTCGTTGCATTGACCATGT CAGAGCGTCCTTCGGCCCGC
Downstream 100 bases:
>100_bases TCAGGCGGGCGGCCTGCGCCGAACCGTCGCGCGCGTAGCTCGCGCGGATCCGCGCCGCCTGCTCGCGCAACGATCCGGGA CGCAACAGGCGTTCGAGCGC
Product: cephalosporin hydroxylase
Products: NA
Alternate protein names: Cephalosporin Hydroxylase Family Protein; Preprotein Translocase ATPase Subunit; Cephalosporin Hydroxylase Cmci; Cephalosporin Protein
Number of amino acids: Translated: 221; Mature: 221
Protein sequence:
>221_residues MRDINIEWLTRAAEFDHLFQTRWLGERFFHLPGDMLALQELIWRARPDCIVQTGIAAGGGVVFSASMLELTGGHGRVVAI EPRLRDEVRQRLQSHRLAHRMVLIEGESCATDTLASVRARIGDGARVMAILDLTHTHAHVLRELACYAPLVTPGSYAIVM DTIMEYLPESMFDGKPYGRGNNPATAVHAFLAGDDRFEVDHDIEDRVLMTLSPGGFLKRVR
Sequences:
>Translated_221_residues MRDINIEWLTRAAEFDHLFQTRWLGERFFHLPGDMLALQELIWRARPDCIVQTGIAAGGGVVFSASMLELTGGHGRVVAI EPRLRDEVRQRLQSHRLAHRMVLIEGESCATDTLASVRARIGDGARVMAILDLTHTHAHVLRELACYAPLVTPGSYAIVM DTIMEYLPESMFDGKPYGRGNNPATAVHAFLAGDDRFEVDHDIEDRVLMTLSPGGFLKRVR >Mature_221_residues MRDINIEWLTRAAEFDHLFQTRWLGERFFHLPGDMLALQELIWRARPDCIVQTGIAAGGGVVFSASMLELTGGHGRVVAI EPRLRDEVRQRLQSHRLAHRMVLIEGESCATDTLASVRARIGDGARVMAILDLTHTHAHVLRELACYAPLVTPGSYAIVM DTIMEYLPESMFDGKPYGRGNNPATAVHAFLAGDDRFEVDHDIEDRVLMTLSPGGFLKRVR
Specific function: Unknown
COG id: COG3510
COG function: function code V; Cephalosporin hydroxylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24717; Mature: 24717
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDINIEWLTRAAEFDHLFQTRWLGERFFHLPGDMLALQELIWRARPDCIVQTGIAAGGG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC VVFSASMLELTGGHGRVVAIEPRLRDEVRQRLQSHRLAHRMVLIEGESCATDTLASVRAR CEEEEEHHEEECCCCEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH IGDGARVMAILDLTHTHAHVLRELACYAPLVTPGSYAIVMDTIMEYLPESMFDGKPYGRG CCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC NNPATAVHAFLAGDDRFEVDHDIEDRVLMTLSPGGFLKRVR CCCHHHHEEEECCCCCCCCCCCCCCCEEEEECCCHHHHCCC >Mature Secondary Structure MRDINIEWLTRAAEFDHLFQTRWLGERFFHLPGDMLALQELIWRARPDCIVQTGIAAGGG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC VVFSASMLELTGGHGRVVAIEPRLRDEVRQRLQSHRLAHRMVLIEGESCATDTLASVRAR CEEEEEHHEEECCCCEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH IGDGARVMAILDLTHTHAHVLRELACYAPLVTPGSYAIVMDTIMEYLPESMFDGKPYGRG CCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC NNPATAVHAFLAGDDRFEVDHDIEDRVLMTLSPGGFLKRVR CCCHHHHEEEECCCCCCCCCCCCCCCEEEEECCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA