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The map label for this gene is nodB [H]

Identifier: 115351749

GI number: 115351749

Start: 1879423

End: 1879998

Strand: Direct

Name: nodB [H]

Synonym: Bamb_1697

Alternate gene names: 115351749

Gene position: 1879423-1879998 (Clockwise)

Preceding gene: 115351748

Following gene: 115351751

Centisome position: 52.84

GC content: 69.79

Gene sequence:

>576_bases
ATGTCCATTCACCTCAGTTTCGACGACGGCCCCGGCCCGTCGACGCCGTCGTTGCTCGACGTCCTGCGCGACGCATCGTG
CAAGGCGACCTTCTTCCTGCTCGGCACGAACCTGGCGGGCGCGCTCGACGTCGCGGCGAGAATGGCGCACGAAGGCCACC
GGCTCGGCAATCACACCCGTTCGCACGCGAGACCGGGCGCGCTGGCGGACGACGTGCTGATCGACGAGATCGAGGCAACC
GACGCGCTGATTCGCGAGGCCTGCCGCCGCGCCGGCGTTCCTGCGCCGGACGCGATCCCGCTGCGCCTTCCGTACGGGTT
GATGCCGCGGGACAATCGCGCAGCCGTGCTCGCGCGCCTGCAACGCGAACACACCGGCTGGACCGCGATACTGGATGACT
GGCAGCGGCCGGCGCCGTCACCGCAGGCGCTATTCGACGCAATGTGCGCGCATGTCGACGCGAGCGCGGCGCGGCATCGC
GACGTGCTGTTCTGCATGCACGACGGATCGCGGCACGGCGAAGCGCGGCCCAACACGGTCGAAGCCGTGCGCCTGTTCCT
GAATCGGCAGCGCTGA

Upstream 100 bases:

>100_bases
GTTGCGCGCGCATGCTTTCGCTCGCTAACAACGCACGACCGATCGGCCTCCGGATTGCGCTATCGTTCAGGTTCCACTCA
CACGACGCGCCGTCCACGCG

Downstream 100 bases:

>100_bases
CACGACTACCGGCTAGCTTTCGGGCGCCGCCTCGTCCAGCAACTGGCGCCAGCCGCCGAGAAATCCGATGCCCGGCCCCG
GCATCCACAGGCCGCGCTGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSIHLSFDDGPGPSTPSLLDVLRDASCKATFFLLGTNLAGALDVAARMAHEGHRLGNHTRSHARPGALADDVLIDEIEAT
DALIREACRRAGVPAPDAIPLRLPYGLMPRDNRAAVLARLQREHTGWTAILDDWQRPAPSPQALFDAMCAHVDASAARHR
DVLFCMHDGSRHGEARPNTVEAVRLFLNRQR

Sequences:

>Translated_191_residues
MSIHLSFDDGPGPSTPSLLDVLRDASCKATFFLLGTNLAGALDVAARMAHEGHRLGNHTRSHARPGALADDVLIDEIEAT
DALIREACRRAGVPAPDAIPLRLPYGLMPRDNRAAVLARLQREHTGWTAILDDWQRPAPSPQALFDAMCAHVDASAARHR
DVLFCMHDGSRHGEARPNTVEAVRLFLNRQR
>Mature_190_residues
SIHLSFDDGPGPSTPSLLDVLRDASCKATFFLLGTNLAGALDVAARMAHEGHRLGNHTRSHARPGALADDVLIDEIEATD
ALIREACRRAGVPAPDAIPLRLPYGLMPRDNRAAVLARLQREHTGWTAILDDWQRPAPSPQALFDAMCAHVDASAARHRD
VLFCMHDGSRHGEARPNTVEAVRLFLNRQR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 20890; Mature: 20759

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIHLSFDDGPGPSTPSLLDVLRDASCKATFFLLGTNLAGALDVAARMAHEGHRLGNHTR
CEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCH
SHARPGALADDVLIDEIEATDALIREACRRAGVPAPDAIPLRLPYGLMPRDNRAAVLARL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHH
QREHTGWTAILDDWQRPAPSPQALFDAMCAHVDASAARHRDVLFCMHDGSRHGEARPNTV
HHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHH
EAVRLFLNRQR
HHHHHHHHCCC
>Mature Secondary Structure 
SIHLSFDDGPGPSTPSLLDVLRDASCKATFFLLGTNLAGALDVAARMAHEGHRLGNHTR
EEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCH
SHARPGALADDVLIDEIEATDALIREACRRAGVPAPDAIPLRLPYGLMPRDNRAAVLARL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHH
QREHTGWTAILDDWQRPAPSPQALFDAMCAHVDASAARHRDVLFCMHDGSRHGEARPNTV
HHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHH
EAVRLFLNRQR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]