| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is fecE [H]
Identifier: 115351748
GI number: 115351748
Start: 1878488
End: 1879297
Strand: Direct
Name: fecE [H]
Synonym: Bamb_1696
Alternate gene names: 115351748
Gene position: 1878488-1879297 (Clockwise)
Preceding gene: 115351747
Following gene: 115351749
Centisome position: 52.82
GC content: 71.36
Gene sequence:
>810_bases ATGGCTGAGCCGATGCTGCATCTCGACGCGCTGTGCGTCCGCTACGGCGCCCGGGTCGTGCTCGACGGGCTGTCGCTCGC GCCGGTCGAGCCGGGCACGACGGTCGGGCTGCTCGGGCCGAACGGCGTCGGCAAGTCGACGCTGCTGCGCGCACTGGCAC GGCTTGCGTCCCCGACCGGTCGCGCGACATTCGGCAGCTTCGACCTGCTGGACGGGTCGCGCCGCGAACACACGCGGCAG GTCGGCTATCTGCCGCAGACCTTGCCGCAACCGTCGTCGCTACTCGTGTACGAAGCCGTGCGCAGCGCGTTGCGCGCCAC CTGCGGCGGCCTGTCCGACGCGACGCGCGACCGGCGCTTGCAACAGGTGTTCACGCGGCTGCGGCTGCACCCGCTGGCAA TGTCGCCACTCGACCGGTTGTCGGGTGGCCAGCGGCAGATGGTCGGGCTCGCGCAGGTGCTCGTGCGCGACACGCCGCTG CTGCTGCTCGACGAACCGACCAGCGCGCTCGACCTGCGCTGGCAATTGCTCGCCCTTGAGGCGGTGGGCGAGGCGGCCCG CCAGCGTGGCGCAATCGTGCTGGTCGCGATGCACGACCTGAATCTCGCCTCGCGATTCTGCGACCGGCTCGTGCTGCTGA GCGCCGACGGACTCGTCGCGGACGGCGCGCCGGCCGACGTGCTGACGCCGCCGAACCTGCGGCGCGCGTACCGCGTCGAT GCAAGGGTCGAACGCACGGCGTCGGGCGATTATGTCGCGCTGGCAGAGCGGGCAATTCCGGACGAGCCGGCGCTTGCTTG CGACAATTGA
Upstream 100 bases:
>100_bases AAGACGCTGATCCCCGGCGTGACGCTGCCGATCGGCATCATCACCGCGCTGGTCGGCGTGCCGTTGTTCATGCTGCTCGT CAGCCGGCGCGGGAGGCTCC
Downstream 100 bases:
>100_bases GCGATTCGACGCTTGAGCACGGGCGGTTGCGCGCGCATGCTTTCGCTCGCTAACAACGCACGACCGATCGGCCTCCGGAT TGCGCTATCGTTCAGGTTCC
Product: ABC transporter-like protein
Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]
Alternate protein names: Iron(III) dicitrate transport ATP-binding protein FecE [H]
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MAEPMLHLDALCVRYGARVVLDGLSLAPVEPGTTVGLLGPNGVGKSTLLRALARLASPTGRATFGSFDLLDGSRREHTRQ VGYLPQTLPQPSSLLVYEAVRSALRATCGGLSDATRDRRLQQVFTRLRLHPLAMSPLDRLSGGQRQMVGLAQVLVRDTPL LLLDEPTSALDLRWQLLALEAVGEAARQRGAIVLVAMHDLNLASRFCDRLVLLSADGLVADGAPADVLTPPNLRRAYRVD ARVERTASGDYVALAERAIPDEPALACDN
Sequences:
>Translated_269_residues MAEPMLHLDALCVRYGARVVLDGLSLAPVEPGTTVGLLGPNGVGKSTLLRALARLASPTGRATFGSFDLLDGSRREHTRQ VGYLPQTLPQPSSLLVYEAVRSALRATCGGLSDATRDRRLQQVFTRLRLHPLAMSPLDRLSGGQRQMVGLAQVLVRDTPL LLLDEPTSALDLRWQLLALEAVGEAARQRGAIVLVAMHDLNLASRFCDRLVLLSADGLVADGAPADVLTPPNLRRAYRVD ARVERTASGDYVALAERAIPDEPALACDN >Mature_268_residues AEPMLHLDALCVRYGARVVLDGLSLAPVEPGTTVGLLGPNGVGKSTLLRALARLASPTGRATFGSFDLLDGSRREHTRQV GYLPQTLPQPSSLLVYEAVRSALRATCGGLSDATRDRRLQQVFTRLRLHPLAMSPLDRLSGGQRQMVGLAQVLVRDTPLL LLDEPTSALDLRWQLLALEAVGEAARQRGAIVLVAMHDLNLASRFCDRLVLLSADGLVADGAPADVLTPPNLRRAYRVDA RVERTASGDYVALAERAIPDEPALACDN
Specific function: Part of the binding-protein-dependent transport system for citrate-dependent Fe(3+). Probably responsible for energy coupling to the transport system [H]
COG id: COG1120
COG function: function code PH; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=225, Percent_Identity=27.1111111111111, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI255708477, Length=223, Percent_Identity=30.0448430493274, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI42741659, Length=179, Percent_Identity=31.2849162011173, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI153792144, Length=199, Percent_Identity=30.1507537688442, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27262624, Length=197, Percent_Identity=25.3807106598985, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI27262626, Length=197, Percent_Identity=25.3807106598985, Blast_Score=68, Evalue=7e-12, Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=38.6831275720165, Blast_Score=144, Evalue=7e-36, Organism=Escherichia coli, GI1786345, Length=236, Percent_Identity=36.4406779661017, Blast_Score=134, Evalue=8e-33, Organism=Escherichia coli, GI1786803, Length=246, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1788002, Length=221, Percent_Identity=34.841628959276, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790544, Length=266, Percent_Identity=28.1954887218045, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI48994943, Length=234, Percent_Identity=32.9059829059829, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1788165, Length=229, Percent_Identity=30.5676855895196, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081782, Length=232, Percent_Identity=30.1724137931034, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=29.646017699115, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1788506, Length=226, Percent_Identity=30.5309734513274, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788225, Length=238, Percent_Identity=27.7310924369748, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=27.3504273504274, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=29.2035398230088, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=31.4893617021277, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789032, Length=210, Percent_Identity=31.4285714285714, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786398, Length=225, Percent_Identity=31.1111111111111, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=202, Percent_Identity=36.1386138613861, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87081791, Length=235, Percent_Identity=28.5106382978723, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1790467, Length=232, Percent_Identity=30.6034482758621, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=28.9915966386555, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=32.8888888888889, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=28.5106382978723, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789864, Length=255, Percent_Identity=24.3137254901961, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=28.3950617283951, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=31.9634703196347, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786563, Length=265, Percent_Identity=30.9433962264151, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788450, Length=274, Percent_Identity=29.5620437956204, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787759, Length=264, Percent_Identity=27.6515151515151, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1789751, Length=218, Percent_Identity=31.651376146789, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=29.6747967479675, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI87082268, Length=243, Percent_Identity=28.8065843621399, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787500, Length=219, Percent_Identity=27.3972602739726, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787712, Length=226, Percent_Identity=26.5486725663717, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=31.651376146789, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789963, Length=251, Percent_Identity=27.0916334661355, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI48994883, Length=218, Percent_Identity=25.2293577981651, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787164, Length=235, Percent_Identity=33.1914893617021, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=27.5555555555556, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789962, Length=226, Percent_Identity=26.1061946902655, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1787112, Length=209, Percent_Identity=28.2296650717703, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789991, Length=217, Percent_Identity=26.2672811059908, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790534, Length=204, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17541710, Length=193, Percent_Identity=34.7150259067358, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17558664, Length=204, Percent_Identity=31.3725490196078, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17567265, Length=244, Percent_Identity=30.327868852459, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17565938, Length=223, Percent_Identity=29.1479820627803, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17569143, Length=192, Percent_Identity=32.2916666666667, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193202349, Length=227, Percent_Identity=29.5154185022026, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115535101, Length=223, Percent_Identity=32.7354260089686, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115533608, Length=234, Percent_Identity=29.0598290598291, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983523, Length=218, Percent_Identity=32.5688073394495, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983516, Length=218, Percent_Identity=32.5688073394495, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983510, Length=218, Percent_Identity=32.5688073394495, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17559834, Length=216, Percent_Identity=28.2407407407407, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17510237, Length=210, Percent_Identity=29.0476190476191, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25146777, Length=253, Percent_Identity=27.6679841897233, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565586, Length=201, Percent_Identity=30.8457711442786, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115532730, Length=198, Percent_Identity=29.7979797979798, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17533971, Length=223, Percent_Identity=27.3542600896861, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533592, Length=191, Percent_Identity=30.8900523560209, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=220, Percent_Identity=28.1818181818182, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324904, Length=233, Percent_Identity=29.1845493562232, Blast_Score=65, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6319856, Length=204, Percent_Identity=30.3921568627451, Blast_Score=63, Evalue=6e-11, Organism=Drosophila melanogaster, GI85726357, Length=225, Percent_Identity=30.2222222222222, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=30.9090909090909, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI281361582, Length=264, Percent_Identity=27.6515151515151, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281363262, Length=228, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24653245, Length=228, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24643674, Length=226, Percent_Identity=27.8761061946903, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24661270, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355589, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28926; Mature: 28795
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEPMLHLDALCVRYGARVVLDGLSLAPVEPGTTVGLLGPNGVGKSTLLRALARLASPTG CCCCHHHHHHHHHHHCCCEEECCCEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC RATFGSFDLLDGSRREHTRQVGYLPQTLPQPSSLLVYEAVRSALRATCGGLSDATRDRRL CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH QQVFTRLRLHPLAMSPLDRLSGGQRQMVGLAQVLVRDTPLLLLDEPTSALDLRWQLLALE HHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH AVGEAARQRGAIVLVAMHDLNLASRFCDRLVLLSADGLVADGAPADVLTPPNLRRAYRVD HHHHHHHHCCCEEEEEECCCHHHHHHHHHEEEEECCCCEECCCCCCCCCCCCCHHHHHHC ARVERTASGDYVALAERAIPDEPALACDN HHHHHCCCCCEEEEHHHCCCCCCCCCCCC >Mature Secondary Structure AEPMLHLDALCVRYGARVVLDGLSLAPVEPGTTVGLLGPNGVGKSTLLRALARLASPTG CCCHHHHHHHHHHHCCCEEECCCEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC RATFGSFDLLDGSRREHTRQVGYLPQTLPQPSSLLVYEAVRSALRATCGGLSDATRDRRL CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH QQVFTRLRLHPLAMSPLDRLSGGQRQMVGLAQVLVRDTPLLLLDEPTSALDLRWQLLALE HHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH AVGEAARQRGAIVLVAMHDLNLASRFCDRLVLLSADGLVADGAPADVLTPPNLRRAYRVD HHHHHHHHCCCEEEEEECCCHHHHHHHHHEEEEECCCCEECCCCCCCCCCCCCHHHHHHC ARVERTASGDYVALAERAIPDEPALACDN HHHHHCCCCCEEEEHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]
Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2651410; 7610040; 9278503 [H]