| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351723
Identifier: 115351723
GI number: 115351723
Start: 1847292
End: 1848098
Strand: Direct
Name: 115351723
Synonym: Bamb_1671
Alternate gene names: NA
Gene position: 1847292-1848098 (Clockwise)
Preceding gene: 115351722
Following gene: 115351728
Centisome position: 51.94
GC content: 74.1
Gene sequence:
>807_bases ATGCTGATTTCCCTCGTACTCGGCGGCTTCGTCGGCGCCGTGCTCGGCCTCACCGGCGCGGGCGGCGGCATTCTCGCGGT GCCCGCGCTCGTCGCCGGGATGGGCTGGCCGATGCAGCAAGCCACGCCCGTCGCGCTCGTCGCGGTCGCGGGCAGCGCCG CGCTCGGCGCGCTCGAAGGGTTTCGCCGCGGGCTCGTGCGCTATCGCGCGGCGCTGCTGATGGCCGTGGCCGGCGTGCCG CTCACGACGCTCGGCGTGCGGCTCGCGCACGTGCTGCCGCAGCGCGTGCTGCTGGCGCTGTTCGCGCTGACGATGCTGGT CGTCGCGGGCCGCCTGCTACGGCAGGCGCTGCGCAACGCGCCCGGCGACACGGCCGAATCGCCGCTGTGCGTCGGTCGCG TGAATCCCGATACCGGCCGGCTCGTGTGGTCCTGGCCGGTCGGCGTCGCGCTCGCGTCGACCGGCGCGGTGACGGGACTG ATGACGGGGCTGCTGGGCGTCGGCGGCGGCTTCGTGATCGTGCCGATGCTGCGCAAGTTCACGAACGTGTCGATGCACGG CGTGGTCGCGACGTCGCTGATGGTGATCGCGTTGGTCGGCACCGGCGGCGTGTTCGCGACGCTCGTGTCGGGCACGCGCG CGCCGCTCGACATGATGCTATGGTTCACGGTCGCGACCGCGCTCGGGATGGCCGTCGGCCGCAGCGCGTCCCGGCACCTG TCCGCGCGGCACGTGCAGGCCGGCTTCGCGGCCGTGCTCGTCTGCGTGGCGTGCGGGCTGCTGGCGAAGGCGGCGTTCGG CGCCTAA
Upstream 100 bases:
>100_bases GGAGCGCGTGCTGCCGCCGCTCTACTGGAAGGCGATGCTCAAGGGCCGCGAATGGCTCGCGAAGCCCGCGATCGCCCGTT GACCGGAACCCGCTGACATC
Downstream 100 bases:
>100_bases GCCGCGCGCCGCACGCGGCGCATACCCCAAAACAAAACGCCCGGCCCGACTCGTCGTCGGCACCGGGCGTTTTTCGTTGC GTGCGCAACCTGCGCGCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MLISLVLGGFVGAVLGLTGAGGGILAVPALVAGMGWPMQQATPVALVAVAGSAALGALEGFRRGLVRYRAALLMAVAGVP LTTLGVRLAHVLPQRVLLALFALTMLVVAGRLLRQALRNAPGDTAESPLCVGRVNPDTGRLVWSWPVGVALASTGAVTGL MTGLLGVGGGFVIVPMLRKFTNVSMHGVVATSLMVIALVGTGGVFATLVSGTRAPLDMMLWFTVATALGMAVGRSASRHL SARHVQAGFAAVLVCVACGLLAKAAFGA
Sequences:
>Translated_268_residues MLISLVLGGFVGAVLGLTGAGGGILAVPALVAGMGWPMQQATPVALVAVAGSAALGALEGFRRGLVRYRAALLMAVAGVP LTTLGVRLAHVLPQRVLLALFALTMLVVAGRLLRQALRNAPGDTAESPLCVGRVNPDTGRLVWSWPVGVALASTGAVTGL MTGLLGVGGGFVIVPMLRKFTNVSMHGVVATSLMVIALVGTGGVFATLVSGTRAPLDMMLWFTVATALGMAVGRSASRHL SARHVQAGFAAVLVCVACGLLAKAAFGA >Mature_268_residues MLISLVLGGFVGAVLGLTGAGGGILAVPALVAGMGWPMQQATPVALVAVAGSAALGALEGFRRGLVRYRAALLMAVAGVP LTTLGVRLAHVLPQRVLLALFALTMLVVAGRLLRQALRNAPGDTAESPLCVGRVNPDTGRLVWSWPVGVALASTGAVTGL MTGLLGVGGGFVIVPMLRKFTNVSMHGVVATSLMVIALVGTGGVFATLVSGTRAPLDMMLWFTVATALGMAVGRSASRHL SARHVQAGFAAVLVCVACGLLAKAAFGA
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26967; Mature: 26967
Theoretical pI: Translated: 12.29; Mature: 12.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLISLVLGGFVGAVLGLTGAGGGILAVPALVAGMGWPMQQATPVALVAVAGSAALGALEG CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHH FRRGLVRYRAALLMAVAGVPLTTLGVRLAHVLPQRVLLALFALTMLVVAGRLLRQALRNA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGDTAESPLCVGRVNPDTGRLVWSWPVGVALASTGAVTGLMTGLLGVGGGFVIVPMLRKF CCCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH TNVSMHGVVATSLMVIALVGTGGVFATLVSGTRAPLDMMLWFTVATALGMAVGRSASRHL HCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH SARHVQAGFAAVLVCVACGLLAKAAFGA HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLISLVLGGFVGAVLGLTGAGGGILAVPALVAGMGWPMQQATPVALVAVAGSAALGALEG CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHH FRRGLVRYRAALLMAVAGVPLTTLGVRLAHVLPQRVLLALFALTMLVVAGRLLRQALRNA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGDTAESPLCVGRVNPDTGRLVWSWPVGVALASTGAVTGLMTGLLGVGGGFVIVPMLRKF CCCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH TNVSMHGVVATSLMVIALVGTGGVFATLVSGTRAPLDMMLWFTVATALGMAVGRSASRHL HCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH SARHVQAGFAAVLVCVACGLLAKAAFGA HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA