| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is blh [H]
Identifier: 115351722
GI number: 115351722
Start: 1845594
End: 1847273
Strand: Direct
Name: blh [H]
Synonym: Bamb_1670
Alternate gene names: 115351722
Gene position: 1845594-1847273 (Clockwise)
Preceding gene: 115351721
Following gene: 115351723
Centisome position: 51.89
GC content: 72.5
Gene sequence:
>1680_bases ATGACCATCCGCCCGCTGACCGACCTGCTGTCGGTCTCGCCCCAGATCGCCGCGACCGACCTGCCCGCGCTGCACGCGGC GGGCATCCGCGCGATCGTCTGCAACCGTCCGGACGGCGAAGGCGCCGACCAACCGACCGTCGCCGAGATCCGCGCCGCCG CCGCGCCGCTCGGCATCGCCGTGCATTACCTGCCCGTCGATACCGGCAAGGTCACCGACGAGCAGGCCGCGCAGTTCGGC GCGCTCGTCGCGACGCTCGCCGGCCCGGTCCTCGCGTACTGCCGCAGCGGCACGCGTTCGGCGACGCTGTGGGCGCTGTC GCAGGCGGGCCGACGCCCGGCCGGCGACATCGTCGCGAGCGCCGCCGCGGCCGGCTACGACCTCGGCGCGCTCGCGCCGC GTCTTGCGCAACGCGTGGCGCCAGGCGTCGATCAGGCCGCACCGGCCGTCGACGCGCGGCACGACATCGTGATCGTCGGC GCGGGCGCGGCCGGCGTCGCGGTCGCGTCGAGCCTGCTTGCGCGCGACGCGTCGCTCGATATCGCGGTGATCGATCCGGC CGATACCCACTACTACCAGCCGGGCTGGACGATGGTCGGCGCGGGCGTGTTCCGGCCCGACACGACCGCGCGCCGGATGG CCGACCTGCTGCCGCGCGGCGTGACATGGATCCAGGCGGCGGTCGCCGGCTTCGAACCCGACGCGCACGCGGTCGTGCTC GACGGCTGCCGGCGCATCGGCTACCGGAGGCTGGTCGTGTGCCCGGGGCTCAAGCTCGACTGGCACGCGATCGACGGCCT CGCGCAAACCCTCGGCCGCAACGGCGTCACGTCGAACTATCGCTACGATCTCGCGCCGTACACGTGGGAACTGGTGCAGG CGTTCCGCGGCGGCAATGCGCTGTTCACGCAGCCGCCGATGCCGATCAAGTGCGCGGGCGCGCCGCAAAAGGCGATGTAC CTGTCGTGCGATCACTGGCGGCGCACGGGGCGCCTCGGCGCCGCGAACGTCGAGTTCCTGAATGCGGGCGGCGCGCTGTT CGGCGTCGCCGACTACGTGCCCGCGCTGATGGAATACGTGAAACGCTATGACATCGCGCTGTCGTTCGGCCACAACCTGG TCGCGATCGACGGGCCGGCGCGACGCGCGACGTTCACACGCGCGCTGCCCGACGGCGGCACCGAAACCGTCGAGCGGGCG TTCGACATGATCCACGTCGTGCCGCCGCAGAAGGCGCCCGATTTCGTGCGCGCGAGCCCGCTCGCCGACGCGGCCGGCTG GATCGACGTCGATCCGGCGACGCTGCGGCACAAGCGGCACGCGGACATCTTCGCGCTCGGCGACGTCACCAACACGACCA ACGCGAAAACCGCCGCGGCCGCACGCAAGCAGGCGCCCGTCGTCGCGCACAACCTGCTCGCGTCGCTGGGCCGCGCACAC GGCAACGCCGCGTACGACGGCTACGGATCGTGCCCGCTCACCGTCGAGCGCGGCAAGATCGTGCTCGCCGAATTCCTGTA CGGCGGCAAGGTCGCGCCGACCTTCCCCGCGTGGCTGATCGACGGCAAGCGCCCGTCGCGGCTCGCGTGGCTGCTCAAGG AGCGCGTGCTGCCGCCGCTCTACTGGAAGGCGATGCTCAAGGGCCGCGAATGGCTCGCGAAGCCCGCGATCGCCCGTTGA
Upstream 100 bases:
>100_bases CGCGCCGGCCACCTGCCCGAGCCCGAAAACAACGGCGTGCGCTACCTGAAGATCCCGCTCGACGCGATCTGAGCCGCCGC CCCGACCGGAGAACCCCGAC
Downstream 100 bases:
>100_bases CCGGAACCCGCTGACATCATGCTGATTTCCCTCGTACTCGGCGGCTTCGTCGGCGCCGTGCTCGGCCTCACCGGCGCGGG CGGCGGCATTCTCGCGGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 559; Mature: 558
Protein sequence:
>559_residues MTIRPLTDLLSVSPQIAATDLPALHAAGIRAIVCNRPDGEGADQPTVAEIRAAAAPLGIAVHYLPVDTGKVTDEQAAQFG ALVATLAGPVLAYCRSGTRSATLWALSQAGRRPAGDIVASAAAAGYDLGALAPRLAQRVAPGVDQAAPAVDARHDIVIVG AGAAGVAVASSLLARDASLDIAVIDPADTHYYQPGWTMVGAGVFRPDTTARRMADLLPRGVTWIQAAVAGFEPDAHAVVL DGCRRIGYRRLVVCPGLKLDWHAIDGLAQTLGRNGVTSNYRYDLAPYTWELVQAFRGGNALFTQPPMPIKCAGAPQKAMY LSCDHWRRTGRLGAANVEFLNAGGALFGVADYVPALMEYVKRYDIALSFGHNLVAIDGPARRATFTRALPDGGTETVERA FDMIHVVPPQKAPDFVRASPLADAAGWIDVDPATLRHKRHADIFALGDVTNTTNAKTAAAARKQAPVVAHNLLASLGRAH GNAAYDGYGSCPLTVERGKIVLAEFLYGGKVAPTFPAWLIDGKRPSRLAWLLKERVLPPLYWKAMLKGREWLAKPAIAR
Sequences:
>Translated_559_residues MTIRPLTDLLSVSPQIAATDLPALHAAGIRAIVCNRPDGEGADQPTVAEIRAAAAPLGIAVHYLPVDTGKVTDEQAAQFG ALVATLAGPVLAYCRSGTRSATLWALSQAGRRPAGDIVASAAAAGYDLGALAPRLAQRVAPGVDQAAPAVDARHDIVIVG AGAAGVAVASSLLARDASLDIAVIDPADTHYYQPGWTMVGAGVFRPDTTARRMADLLPRGVTWIQAAVAGFEPDAHAVVL DGCRRIGYRRLVVCPGLKLDWHAIDGLAQTLGRNGVTSNYRYDLAPYTWELVQAFRGGNALFTQPPMPIKCAGAPQKAMY LSCDHWRRTGRLGAANVEFLNAGGALFGVADYVPALMEYVKRYDIALSFGHNLVAIDGPARRATFTRALPDGGTETVERA FDMIHVVPPQKAPDFVRASPLADAAGWIDVDPATLRHKRHADIFALGDVTNTTNAKTAAAARKQAPVVAHNLLASLGRAH GNAAYDGYGSCPLTVERGKIVLAEFLYGGKVAPTFPAWLIDGKRPSRLAWLLKERVLPPLYWKAMLKGREWLAKPAIAR >Mature_558_residues TIRPLTDLLSVSPQIAATDLPALHAAGIRAIVCNRPDGEGADQPTVAEIRAAAAPLGIAVHYLPVDTGKVTDEQAAQFGA LVATLAGPVLAYCRSGTRSATLWALSQAGRRPAGDIVASAAAAGYDLGALAPRLAQRVAPGVDQAAPAVDARHDIVIVGA GAAGVAVASSLLARDASLDIAVIDPADTHYYQPGWTMVGAGVFRPDTTARRMADLLPRGVTWIQAAVAGFEPDAHAVVLD GCRRIGYRRLVVCPGLKLDWHAIDGLAQTLGRNGVTSNYRYDLAPYTWELVQAFRGGNALFTQPPMPIKCAGAPQKAMYL SCDHWRRTGRLGAANVEFLNAGGALFGVADYVPALMEYVKRYDIALSFGHNLVAIDGPARRATFTRALPDGGTETVERAF DMIHVVPPQKAPDFVRASPLADAAGWIDVDPATLRHKRHADIFALGDVTNTTNAKTAAAARKQAPVVAHNLLASLGRAHG NAAYDGYGSCPLTVERGKIVLAEFLYGGKVAPTFPAWLIDGKRPSRLAWLLKERVLPPLYWKAMLKGREWLAKPAIAR
Specific function: Unknown
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-B beta-lactamase family [H]
Homologues:
Organism=Homo sapiens, GI10864011, Length=403, Percent_Identity=36.2282878411911, Blast_Score=308, Evalue=1e-83, Organism=Caenorhabditis elegans, GI115534373, Length=347, Percent_Identity=36.8876080691643, Blast_Score=237, Evalue=1e-62, Organism=Caenorhabditis elegans, GI17539680, Length=421, Percent_Identity=32.541567695962, Blast_Score=231, Evalue=7e-61, Organism=Drosophila melanogaster, GI24657386, Length=396, Percent_Identity=36.6161616161616, Blast_Score=264, Evalue=1e-70, Organism=Drosophila melanogaster, GI24657391, Length=396, Percent_Identity=36.6161616161616, Blast_Score=264, Evalue=1e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005939 - InterPro: IPR001279 [H]
Pfam domain/function: PF04273 DUF442; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 59315; Mature: 59183
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIRPLTDLLSVSPQIAATDLPALHAAGIRAIVCNRPDGEGADQPTVAEIRAAAAPLGIA CCCCCHHHHHHCCCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEE VHYLPVDTGKVTDEQAAQFGALVATLAGPVLAYCRSGTRSATLWALSQAGRRPAGDIVAS EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCHHHHHHH AAAAGYDLGALAPRLAQRVAPGVDQAAPAVDARHDIVIVGAGAAGVAVASSLLARDASLD HHHCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCE IAVIDPADTHYYQPGWTMVGAGVFRPDTTARRMADLLPRGVTWIQAAVAGFEPDAHAVVL EEEECCCCCCEECCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEE DGCRRIGYRRLVVCPGLKLDWHAIDGLAQTLGRNGVTSNYRYDLAPYTWELVQAFRGGNA HHHHHCCCEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHCCCCE LFTQPPMPIKCAGAPQKAMYLSCDHWRRTGRLGAANVEFLNAGGALFGVADYVPALMEYV EEECCCCCEEECCCCCCEEEEECHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH KRYDIALSFGHNLVAIDGPARRATFTRALPDGGTETVERAFDMIHVVPPQKAPDFVRASP HHHHEEEECCCEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHEEEECCCCCCCCCHHCCC LADAAGWIDVDPATLRHKRHADIFALGDVTNTTNAKTAAAARKQAPVVAHNLLASLGRAH CCCCCCEEECCHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC GNAAYDGYGSCPLTVERGKIVLAEFLYGGKVAPTFPAWLIDGKRPSRLAWLLKERVLPPL CCCCCCCCCCCCEEEECCCEEEEEHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHH YWKAMLKGREWLAKPAIAR HHHHHHHCHHHHCCCCCCC >Mature Secondary Structure TIRPLTDLLSVSPQIAATDLPALHAAGIRAIVCNRPDGEGADQPTVAEIRAAAAPLGIA CCCCHHHHHHCCCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEE VHYLPVDTGKVTDEQAAQFGALVATLAGPVLAYCRSGTRSATLWALSQAGRRPAGDIVAS EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCHHHHHHH AAAAGYDLGALAPRLAQRVAPGVDQAAPAVDARHDIVIVGAGAAGVAVASSLLARDASLD HHHCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCE IAVIDPADTHYYQPGWTMVGAGVFRPDTTARRMADLLPRGVTWIQAAVAGFEPDAHAVVL EEEECCCCCCEECCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEE DGCRRIGYRRLVVCPGLKLDWHAIDGLAQTLGRNGVTSNYRYDLAPYTWELVQAFRGGNA HHHHHCCCEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHCCCCE LFTQPPMPIKCAGAPQKAMYLSCDHWRRTGRLGAANVEFLNAGGALFGVADYVPALMEYV EEECCCCCEEECCCCCCEEEEECHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH KRYDIALSFGHNLVAIDGPARRATFTRALPDGGTETVERAFDMIHVVPPQKAPDFVRASP HHHHEEEECCCEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHEEEECCCCCCCCCHHCCC LADAAGWIDVDPATLRHKRHADIFALGDVTNTTNAKTAAAARKQAPVVAHNLLASLGRAH CCCCCCEEECCHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC GNAAYDGYGSCPLTVERGKIVLAEFLYGGKVAPTFPAWLIDGKRPSRLAWLLKERVLPPL CCCCCCCCCCCCEEEECCCEEEEEHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHH YWKAMLKGREWLAKPAIAR HHHHHHHCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194 [H]