Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351728

Identifier: 115351728

GI number: 115351728

Start: 1852644

End: 1852847

Strand: Direct

Name: 115351728

Synonym: Bamb_1676

Alternate gene names: NA

Gene position: 1852644-1852847 (Clockwise)

Preceding gene: 115351723

Following gene: 115351729

Centisome position: 52.09

GC content: 63.73

Gene sequence:

>204_bases
ATGGCCTCCAATCTCCACGACCTGCCTGACAGCCCCTGCATCGGCGTCTGCTCGACCCTCTTCGACGAAGTCTGCAAGGG
CTGCGGCCGCACGGCCGCCGAAGTATCGAACTGGGTGTTCCTGAGCGACGACGAAAAGCGGGCCGTGTGGGAGCGCATCA
CGCGCGAAGGCACCGCGATGCGCTTCCAGTACGACAAGCTGTAA

Upstream 100 bases:

>100_bases
AAACCGCGTGCGCACCGGCGGCGATCCGGCATCCGGCCGGCCGCCCGGCCTCCATGCATTAAAATGACGCCCTGACGATT
TCACGGCGCAAAACCTTCCG

Downstream 100 bases:

>100_bases
GCCGTCCCGCGTCGGCGCATGCCGACGCGATGCGCCCGCCCCGGGCGCCGCTGGCCCGATCATGGGCCGGCCGCCGGCGG
GCCTGACCCAGCCGCACTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Conserved Hypothethical Protein DUF

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MASNLHDLPDSPCIGVCSTLFDEVCKGCGRTAAEVSNWVFLSDDEKRAVWERITREGTAMRFQYDKL

Sequences:

>Translated_67_residues
MASNLHDLPDSPCIGVCSTLFDEVCKGCGRTAAEVSNWVFLSDDEKRAVWERITREGTAMRFQYDKL
>Mature_66_residues
ASNLHDLPDSPCIGVCSTLFDEVCKGCGRTAAEVSNWVFLSDDEKRAVWERITREGTAMRFQYDKL

Specific function: Unknown

COG id: COG3313

COG function: function code R; Predicted Fe-S protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7571; Mature: 7439

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
9.0 %Cys+Met (Translated Protein)
6.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASNLHDLPDSPCIGVCSTLFDEVCKGCGRTAAEVSNWVFLSDDEKRAVWERITREGTAM
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCEEECCCHHHHHHHHHHCCCCEE
RFQYDKL
EEECCCC
>Mature Secondary Structure 
ASNLHDLPDSPCIGVCSTLFDEVCKGCGRTAAEVSNWVFLSDDEKRAVWERITREGTAM
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCEEECCCHHHHHHHHHHCCCCEE
RFQYDKL
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA