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The map label for this gene is nolA [H]

Identifier: 115351715

GI number: 115351715

Start: 1839711

End: 1840742

Strand: Direct

Name: nolA [H]

Synonym: Bamb_1663

Alternate gene names: 115351715

Gene position: 1839711-1840742 (Clockwise)

Preceding gene: 115351714

Following gene: 115351721

Centisome position: 51.73

GC content: 66.86

Gene sequence:

>1032_bases
ATGCGACTGAAAGTGGGAGAACTGGCGAAACGCAGCGGGCTGACCGTCCGCACGCTTCATCACTATCACGCGATCGGTCT
GCTGACGCCTTCGGCGCGCGCCGACAACGGCTACCGGCTGTACGACCGCCACGACATCGCCCGGCTCCACCAGATCCAGG
CGTTGCGTCGCTTCGGACTGTCGCTCGCCGAAATCGGCGACCACCTGAACCAGCCCGGCACCACCCCGCTCGTCGATCTC
ATCTCGAAGCAGATCGCGCTGCTCGACCGTCAGCTCGCGCAGACCGCGCAGCTCCGCGAGCGCCTCGTGAGCCTGCACGC
GCAGCTCGCGGCGGGCACGGAGCCGGAACTGGCCGATTGGCTCACCACACTGGAGTTGATGACCGTGTACGACAAATATT
TTTCCGAGGAAGAACTCGCGCGCATGCCGATGTACCAGAAGAGCCAGGCGGGCGACGCGGAATGGATTTCGCTCATCGGC
GAGGTCCGTGCGCTGCACGACGCGGGCGTGCCGCCCGAGGACGAGCGCGTGCGTGCGCTCGCCGCGCGCTGGATGGCGCT
GCTCGTGCGCGACACGAACAACGACCCGCGGCTGCTCGCGAAGCTGAACCTGATGCACGAACGGGAACCGGCGATGCAGT
CGAAGATCGGCATTTCGACCGCGCTGCGCGACTATGTGCTGCGCGCGACGGCGGAGACGAAAATGCGCATTTTCGAGAAG
TATCTCGCGCCGGACGAGATCCGCTTCATGCGGGCGCACTACGGCGAACGCGCGATGGAATGGCCGCAACTGATGGCCGA
CGTGCGCGACGCGATCGACGCGGGCGCGACGCCCGATTCGCCGCAAGGCCGCGCGCTCGCGCAGCGCTGGCTCGATCTGT
TCTGCAGCTACGCGGGCCACGATCCGGCCACGCACGCCAAGTTTCGCCACGCGCTGATGAACGAGCCGGCGCTGACGAAG
GATTCGTGGACCGACGACACGCTGCTCGGTTTCGTGCGCGACGCGATGGCGCAGCTTGCGCCTGCGCGCTGA

Upstream 100 bases:

>100_bases
GCGCGCGGGGCCATCCCGCGCGCCGATCCGCGATCTTCCGCTTGACCCTCACGTAGCGTAACGTTCGAGACTCCAGTGTG
CGCACCGAACGGAGGAACGA

Downstream 100 bases:

>100_bases
GCGTGTTGAGCGCATGAAGGTGCGGGCGGCACGCGGGTTTCCCGCATGCCGCCCGTTTCACCATTTGCAGCCGGTGTCGC
GAACCGCATCCAGTGCGAGC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MRLKVGELAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRHDIARLHQIQALRRFGLSLAEIGDHLNQPGTTPLVDL
ISKQIALLDRQLAQTAQLRERLVSLHAQLAAGTEPELADWLTTLELMTVYDKYFSEEELARMPMYQKSQAGDAEWISLIG
EVRALHDAGVPPEDERVRALAARWMALLVRDTNNDPRLLAKLNLMHEREPAMQSKIGISTALRDYVLRATAETKMRIFEK
YLAPDEIRFMRAHYGERAMEWPQLMADVRDAIDAGATPDSPQGRALAQRWLDLFCSYAGHDPATHAKFRHALMNEPALTK
DSWTDDTLLGFVRDAMAQLAPAR

Sequences:

>Translated_343_residues
MRLKVGELAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRHDIARLHQIQALRRFGLSLAEIGDHLNQPGTTPLVDL
ISKQIALLDRQLAQTAQLRERLVSLHAQLAAGTEPELADWLTTLELMTVYDKYFSEEELARMPMYQKSQAGDAEWISLIG
EVRALHDAGVPPEDERVRALAARWMALLVRDTNNDPRLLAKLNLMHEREPAMQSKIGISTALRDYVLRATAETKMRIFEK
YLAPDEIRFMRAHYGERAMEWPQLMADVRDAIDAGATPDSPQGRALAQRWLDLFCSYAGHDPATHAKFRHALMNEPALTK
DSWTDDTLLGFVRDAMAQLAPAR
>Mature_343_residues
MRLKVGELAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRHDIARLHQIQALRRFGLSLAEIGDHLNQPGTTPLVDL
ISKQIALLDRQLAQTAQLRERLVSLHAQLAAGTEPELADWLTTLELMTVYDKYFSEEELARMPMYQKSQAGDAEWISLIG
EVRALHDAGVPPEDERVRALAARWMALLVRDTNNDPRLLAKLNLMHEREPAMQSKIGISTALRDYVLRATAETKMRIFEK
YLAPDEIRFMRAHYGERAMEWPQLMADVRDAIDAGATPDSPQGRALAQRWLDLFCSYAGHDPATHAKFRHALMNEPALTK
DSWTDDTLLGFVRDAMAQLAPAR

Specific function: Involved in genotype-specific nodulation of soybeans [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 38818; Mature: 38818

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKVGELAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRHDIARLHQIQALRRFGL
CCCCHHHHHHHCCCEEEHHHHHHHHHEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCC
SLAEIGDHLNQPGTTPLVDLISKQIALLDRQLAQTAQLRERLVSLHAQLAAGTEPELADW
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LTTLELMTVYDKYFSEEELARMPMYQKSQAGDAEWISLIGEVRALHDAGVPPEDERVRAL
HHHHHHHHHHHHHHCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AARWMALLVRDTNNDPRLLAKLNLMHEREPAMQSKIGISTALRDYVLRATAETKMRIFEK
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLAPDEIRFMRAHYGERAMEWPQLMADVRDAIDAGATPDSPQGRALAQRWLDLFCSYAGH
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
DPATHAKFRHALMNEPALTKDSWTDDTLLGFVRDAMAQLAPAR
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLKVGELAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRHDIARLHQIQALRRFGL
CCCCHHHHHHHCCCEEEHHHHHHHHHEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCC
SLAEIGDHLNQPGTTPLVDLISKQIALLDRQLAQTAQLRERLVSLHAQLAAGTEPELADW
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LTTLELMTVYDKYFSEEELARMPMYQKSQAGDAEWISLIGEVRALHDAGVPPEDERVRAL
HHHHHHHHHHHHHHCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AARWMALLVRDTNNDPRLLAKLNLMHEREPAMQSKIGISTALRDYVLRATAETKMRIFEK
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLAPDEIRFMRAHYGERAMEWPQLMADVRDAIDAGATPDSPQGRALAQRWLDLFCSYAGH
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
DPATHAKFRHALMNEPALTKDSWTDDTLLGFVRDAMAQLAPAR
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7949325 [H]