| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351696
Identifier: 115351696
GI number: 115351696
Start: 1817480
End: 1818226
Strand: Direct
Name: 115351696
Synonym: Bamb_1644
Alternate gene names: NA
Gene position: 1817480-1818226 (Clockwise)
Preceding gene: 115351694
Following gene: 115351699
Centisome position: 51.1
GC content: 68.94
Gene sequence:
>747_bases GTGGATCCTCGGCATCGGCGTGGCGCTCGGCTTCGGCATCATCAACGTGATGTGGCTCGAGGCGGAAGTGTTCCCGCGCG ACGACAAGCGCACCGACGCGTCGCGCGCGGGCTCGGGGAGCCGGTATTCGTGACGCACCTGGTGTTCTTCTGCGGTCATG CCGGCACCGGCAAGACCACGCTCGCGAAGCGGCTGATCGGGCCGCTGATGCGCGCGACCGGCGAAGCCTTCTGCCTGCTC GACAAGGACACGCTCTACGGCCGCTACAGCTCGGCCGCGATGGGCGCCCTCACCTCCGATCCGAACGATCGCGACAGCCC GCTCTACCTGAAGCATCTGCGCGATCCCGAATATCAGGGCCTGCTCGACACGGCCCGCGAGAATCTCGCGCTCGGCATCG GCGCGCTCGTGGTCGGCCCGCTGTCGCGCGAAGTGCGTGACCGGCGCATCCTCGACCGCGCGTGGCTCGGCATCGGGCCG GAGATCGCGCTGACGGTCGTCTGGGTGCATACGGCGGAAGACGTCGCGCACCAGCGGATCGTCGCGCGCGGCAACCCGAA CGACGCATACAAGCTCGCGCACTGGGACGAATACCGGCAACGCCGCTTCGTGCCGACCGGCCACGAATGCGACGGCATCG TGATGTTCGACAATACCGCGCCGTCCGACGCGGACATCGATGCGCTGCTGTACCGCATCGTGCCGCCGGCGCCGCAGGCA ACGATGGTCCCGCCGCTGCCCGCCTGA
Upstream 100 bases:
>100_bases GCTGCCTGCGCCGCGGCACGCGCGCGGCACCGCTTCGGCAAACGCACGGCACGGCCGCGCGGCCCAACCATCAAGGAGAC AGACCCATGTGGTATTTCTC
Downstream 100 bases:
>100_bases GCCGCACACGCACCACCCTGCTCCTGCCTGCTTCGACCAGCCTCAAAAAAAACGCCGGAAGCGCTGTTGCGCTCCCGGCG TTGCACGGCCCTCGTGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: P-Loop ATPase Protein; ATP-Ase; Shikimate Kinase; Transcriptional Regulator
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MDPRHRRGARLRHHQRDVARGGSVPARRQAHRRVARGLGEPVFVTHLVFFCGHAGTGKTTLAKRLIGPLMRATGEAFCLL DKDTLYGRYSSAAMGALTSDPNDRDSPLYLKHLRDPEYQGLLDTARENLALGIGALVVGPLSREVRDRRILDRAWLGIGP EIALTVVWVHTAEDVAHQRIVARGNPNDAYKLAHWDEYRQRRFVPTGHECDGIVMFDNTAPSDADIDALLYRIVPPAPQA TMVPPLPA
Sequences:
>Translated_248_residues MDPRHRRGARLRHHQRDVARGGSVPARRQAHRRVARGLGEPVFVTHLVFFCGHAGTGKTTLAKRLIGPLMRATGEAFCLL DKDTLYGRYSSAAMGALTSDPNDRDSPLYLKHLRDPEYQGLLDTARENLALGIGALVVGPLSREVRDRRILDRAWLGIGP EIALTVVWVHTAEDVAHQRIVARGNPNDAYKLAHWDEYRQRRFVPTGHECDGIVMFDNTAPSDADIDALLYRIVPPAPQA TMVPPLPA >Mature_248_residues MDPRHRRGARLRHHQRDVARGGSVPARRQAHRRVARGLGEPVFVTHLVFFCGHAGTGKTTLAKRLIGPLMRATGEAFCLL DKDTLYGRYSSAAMGALTSDPNDRDSPLYLKHLRDPEYQGLLDTARENLALGIGALVVGPLSREVRDRRILDRAWLGIGP EIALTVVWVHTAEDVAHQRIVARGNPNDAYKLAHWDEYRQRRFVPTGHECDGIVMFDNTAPSDADIDALLYRIVPPAPQA TMVPPLPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27540; Mature: 27540
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPRHRRGARLRHHQRDVARGGSVPARRQAHRRVARGLGEPVFVTHLVFFCGHAGTGKTT CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHH LAKRLIGPLMRATGEAFCLLDKDTLYGRYSSAAMGALTSDPNDRDSPLYLKHLRDPEYQG HHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHH LLDTARENLALGIGALVVGPLSREVRDRRILDRAWLGIGPEIALTVVWVHTAEDVAHQRI HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHH VARGNPNDAYKLAHWDEYRQRRFVPTGHECDGIVMFDNTAPSDADIDALLYRIVPPAPQA HHCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC TMVPPLPA CCCCCCCC >Mature Secondary Structure MDPRHRRGARLRHHQRDVARGGSVPARRQAHRRVARGLGEPVFVTHLVFFCGHAGTGKTT CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHH LAKRLIGPLMRATGEAFCLLDKDTLYGRYSSAAMGALTSDPNDRDSPLYLKHLRDPEYQG HHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHH LLDTARENLALGIGALVVGPLSREVRDRRILDRAWLGIGPEIALTVVWVHTAEDVAHQRI HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHH VARGNPNDAYKLAHWDEYRQRRFVPTGHECDGIVMFDNTAPSDADIDALLYRIVPPAPQA HHCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC TMVPPLPA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA