| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351660
Identifier: 115351660
GI number: 115351660
Start: 1784060
End: 1784431
Strand: Direct
Name: 115351660
Synonym: Bamb_1607
Alternate gene names: NA
Gene position: 1784060-1784431 (Clockwise)
Preceding gene: 115351659
Following gene: 115351661
Centisome position: 50.16
GC content: 64.52
Gene sequence:
>372_bases ATGTCTGCTACATGGTTCAACGGATCCTGCCATTGCGGCGCGGTGAAATTCGAAGTCCGGGCGGCGCTTGCGCCGGCGAC CCGCTGCAACTGCAGCCTCTGCCGCCGTCGCGGCGCGCTGATGAGCCCGATGTTCGATGCAAGCGAACTGAAGATCGTCG CAGGCGAGAGCGCGTTGACCAGCTACCGGTTCAACACGCACACGGCACACCACTTTTTCTGCAGCCGGTGCGGGATCTAC CCGTTCCACCAGACGCGCAAGGATCCCGCGTGCTGGCGGGTCAATCTCGGCTGCCTCGAGGGTGTCGATCCGTACGCGCT CGAAGCGACGGTCGCCGACGGTGCGAGCCTTTCCGTCGTGGAGGACGCATGA
Upstream 100 bases:
>100_bases TTGCAATGTTCTGTATCCGAGCGCCGCACGGATACAACGCGATACAAAGCATGGGCCCCGACCCGCTATAAAGCAGACAT GATCTCCTGAGGAGCACGAC
Downstream 100 bases:
>100_bases AACGCTGGCTGATGATCCTGCTGTTCGCCGCGGGCGGACTCGCGACCGAAATCGCCCATCCGGTGCAGTGTTCGCTGCTG TCGATCAGCCGGCAGCGGGT
Product: glutathione-dependent formaldehyde-activating protein
Products: NA
Alternate protein names: Glutathione-Dependent Formaldehyde-Activating; Glutathione-Dependent Formaldehyde-Activating Protein; Plasmid PRiA4b ORF-3 Family Protein; Glutathione-Dependent Formaldehyde-Activating Protein GFA; Glutathione-Dependent Formaldehyde-Activating Family; Inner Membrane Protein; Gfa-Like Protein; Glutathione-Dependent Formaldehyde-Activating Protein Gfa
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MSATWFNGSCHCGAVKFEVRAALAPATRCNCSLCRRRGALMSPMFDASELKIVAGESALTSYRFNTHTAHHFFCSRCGIY PFHQTRKDPACWRVNLGCLEGVDPYALEATVADGASLSVVEDA
Sequences:
>Translated_123_residues MSATWFNGSCHCGAVKFEVRAALAPATRCNCSLCRRRGALMSPMFDASELKIVAGESALTSYRFNTHTAHHFFCSRCGIY PFHQTRKDPACWRVNLGCLEGVDPYALEATVADGASLSVVEDA >Mature_122_residues SATWFNGSCHCGAVKFEVRAALAPATRCNCSLCRRRGALMSPMFDASELKIVAGESALTSYRFNTHTAHHFFCSRCGIYP FHQTRKDPACWRVNLGCLEGVDPYALEATVADGASLSVVEDA
Specific function: Unknown
COG id: COG3791
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI56118234, Length=94, Percent_Identity=41.4893617021277, Blast_Score=75, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25149380, Length=117, Percent_Identity=34.1880341880342, Blast_Score=72, Evalue=4e-14, Organism=Caenorhabditis elegans, GI25149382, Length=90, Percent_Identity=40, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13409; Mature: 13278
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 9.8 %Cys+Met (Translated Protein) 7.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 9.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATWFNGSCHCGAVKFEVRAALAPATRCNCSLCRRRGALMSPMFDASELKIVAGESALT CCCEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCE SYRFNTHTAHHFFCSRCGIYPFHQTRKDPACWRVNLGCLEGVDPYALEATVADGASLSVV EEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEE EDA ECC >Mature Secondary Structure SATWFNGSCHCGAVKFEVRAALAPATRCNCSLCRRRGALMSPMFDASELKIVAGESALT CCEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCE SYRFNTHTAHHFFCSRCGIYPFHQTRKDPACWRVNLGCLEGVDPYALEATVADGASLSVV EEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEE EDA ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA