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The map label for this gene is pilC [H]

Identifier: 115351485

GI number: 115351485

Start: 1583128

End: 1584309

Strand: Direct

Name: pilC [H]

Synonym: Bamb_1432

Alternate gene names: 115351485

Gene position: 1583128-1584309 (Clockwise)

Preceding gene: 115351484

Following gene: 115351486

Centisome position: 44.51

GC content: 68.7

Gene sequence:

>1182_bases
ATGCAGGCATTTCGGGTACGCGTGCTCGCCGACGGCAAGATCGCCCAGCAGACGATCGAAGCCGCGAGCGAGATGGAGGT
GCGCGCACGGCTCGCGGAGAAGGGCGGCGTCGTGCTCGAGGTCCGGCGCGATAAACGTATCGGGCGCCGCCGTGCACCGA
AGTTTGCGCTGGCGCTGTTCCTGCAGGAATTGTCGACGCTGCTCGACGCCGGCCTCGTGCTGTTCGAGGCGCTGGAAGCG
TTGCGCGACAAGGCGGATTCGGGCAAGGACGCGAAGTACGTGATCGACCGCCTGCTCGCGGTGATGGTCGAGGGGCAGCC
GTTGTCGAAGGCGCTCGCTCGGCAGCCGGCGATTTTTCCGCCGCTGCTGGTGGCGACGGTCGAATCGTCGGAGGGCAGCG
GTCAGTTGCCGGTGGTCCTGAAGCGTTACCAGCAGTACGAAGTGCGAATCGAACAGGTCCGCAAGCGCGTCACCGGCGCG
CTGATCTATCCGGCCGTCGTGATCGGCGTCGGCATCGCGATCCTGCTGTTCATGGCGTTCTTCGTGATTCCGCGCTTCGC
GGTGGTGTTCGAGTCGCTGGCCACGCTGCCGCCGACCGCGCACGCGATGCTCTGGTGGGCGAACCTGCTGCGCGAGAACG
GGATGGCGGTCGGGCTCGCGGTCGCGGCGTCGTTCGTCGGCGCGGGGCTGGCGATCCGCTCGGCGGCGTTCAAGCGCGCC
GCGCAGCGGCTGATGTGGCGCGCGCCGAAAGTGCGCGACGTCTGCGCACTGTTCGCGCTCACGCGCTTTTACCGAACGGT
CGGCCTGCTGATCGCGGGCGGCACGCCGGTGATCGTCGCGCTGGAGCTGTCGGGCAAGGTGCTCCCCGAGCATTTCCGTG
CGCGGCTCGCGGCGGCGCTGATCGACATGCGCGCAGGGCGTCCGGTCGCGGCCGTGCTCGCCGCGCATGCGCTGACGACG
TCGGTCGCCGAGCGGCTGTTGCGCGTGGGCGAGCAGAGCGGCGACCTCGGCGGGATGTGCGAGCACATCGCGCAGTTTCA
CGACGGCGCGCTCGATCGCGCGATCGAGATGCTCAGCAAGGTGTTCGAACCGGTGCTGATGCTCGCGGTGGGCGCGACGG
TCGGCGCGGTGGTCCTGCTGCTTTACATGCCGATCTTCGAATTGGCGGGCAGCGTCGGATAG

Upstream 100 bases:

>100_bases
CACGCAAGGCTTATGCGACCAAGGTCTGGCGCGAGTACCGCGCATTGACGAGCGATCGCGACGCGAGCCTCGCGATGCTC
GACGAATGGCGGAGGTAGCC

Downstream 100 bases:

>100_bases
CGATCCGCACTGTCAACGCGTTCGCGATCCCGCTGTTCAACAGGAGAAAACTCAATGAAAACGGAACACATCGTTCAACG
CTGGCAGTCGGAATCCGAAG

Product: type II secretion system protein

Products: NA

Alternate protein names: Type IV-A pilus assembly protein pilC [H]

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MQAFRVRVLADGKIAQQTIEAASEMEVRARLAEKGGVVLEVRRDKRIGRRRAPKFALALFLQELSTLLDAGLVLFEALEA
LRDKADSGKDAKYVIDRLLAVMVEGQPLSKALARQPAIFPPLLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGA
LIYPAVVIGVGIAILLFMAFFVIPRFAVVFESLATLPPTAHAMLWWANLLRENGMAVGLAVAASFVGAGLAIRSAAFKRA
AQRLMWRAPKVRDVCALFALTRFYRTVGLLIAGGTPVIVALELSGKVLPEHFRARLAAALIDMRAGRPVAAVLAAHALTT
SVAERLLRVGEQSGDLGGMCEHIAQFHDGALDRAIEMLSKVFEPVLMLAVGATVGAVVLLLYMPIFELAGSVG

Sequences:

>Translated_393_residues
MQAFRVRVLADGKIAQQTIEAASEMEVRARLAEKGGVVLEVRRDKRIGRRRAPKFALALFLQELSTLLDAGLVLFEALEA
LRDKADSGKDAKYVIDRLLAVMVEGQPLSKALARQPAIFPPLLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGA
LIYPAVVIGVGIAILLFMAFFVIPRFAVVFESLATLPPTAHAMLWWANLLRENGMAVGLAVAASFVGAGLAIRSAAFKRA
AQRLMWRAPKVRDVCALFALTRFYRTVGLLIAGGTPVIVALELSGKVLPEHFRARLAAALIDMRAGRPVAAVLAAHALTT
SVAERLLRVGEQSGDLGGMCEHIAQFHDGALDRAIEMLSKVFEPVLMLAVGATVGAVVLLLYMPIFELAGSVG
>Mature_393_residues
MQAFRVRVLADGKIAQQTIEAASEMEVRARLAEKGGVVLEVRRDKRIGRRRAPKFALALFLQELSTLLDAGLVLFEALEA
LRDKADSGKDAKYVIDRLLAVMVEGQPLSKALARQPAIFPPLLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGA
LIYPAVVIGVGIAILLFMAFFVIPRFAVVFESLATLPPTAHAMLWWANLLRENGMAVGLAVAASFVGAGLAIRSAAFKRA
AQRLMWRAPKVRDVCALFALTRFYRTVGLLIAGGTPVIVALELSGKVLPEHFRARLAAALIDMRAGRPVAAVLAAHALTT
SVAERLLRVGEQSGDLGGMCEHIAQFHDGALDRAIEMLSKVFEPVLMLAVGATVGAVVLLLYMPIFELAGSVG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=398, Percent_Identity=27.1356783919598, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786295, Length=337, Percent_Identity=25.2225519287834, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 42467; Mature: 42467

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAFRVRVLADGKIAQQTIEAASEMEVRARLAEKGGVVLEVRRDKRIGRRRAPKFALALF
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCHHHHHHHH
LQELSTLLDAGLVLFEALEALRDKADSGKDAKYVIDRLLAVMVEGQPLSKALARQPAIFP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
PLLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGALIYPAVVIGVGIAILLFMAF
CHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVIPRFAVVFESLATLPPTAHAMLWWANLLRENGMAVGLAVAASFVGAGLAIRSAAFKRA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQRLMWRAPKVRDVCALFALTRFYRTVGLLIAGGTPVIVALELSGKVLPEHFRARLAAAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHHHH
IDMRAGRPVAAVLAAHALTTSVAERLLRVGEQSGDLGGMCEHIAQFHDGALDRAIEMLSK
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
VFEPVLMLAVGATVGAVVLLLYMPIFELAGSVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQAFRVRVLADGKIAQQTIEAASEMEVRARLAEKGGVVLEVRRDKRIGRRRAPKFALALF
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCHHHHHHHH
LQELSTLLDAGLVLFEALEALRDKADSGKDAKYVIDRLLAVMVEGQPLSKALARQPAIFP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
PLLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGALIYPAVVIGVGIAILLFMAF
CHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVIPRFAVVFESLATLPPTAHAMLWWANLLRENGMAVGLAVAASFVGAGLAIRSAAFKRA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQRLMWRAPKVRDVCALFALTRFYRTVGLLIAGGTPVIVALELSGKVLPEHFRARLAAAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHHHHH
IDMRAGRPVAAVLAAHALTTSVAERLLRVGEQSGDLGGMCEHIAQFHDGALDRAIEMLSK
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
VFEPVLMLAVGATVGAVVLLLYMPIFELAGSVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10024587; 10952301 [H]