| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351422
Identifier: 115351422
GI number: 115351422
Start: 1504955
End: 1506163
Strand: Direct
Name: 115351422
Synonym: Bamb_1369
Alternate gene names: NA
Gene position: 1504955-1506163 (Clockwise)
Preceding gene: 115351421
Following gene: 115351426
Centisome position: 42.32
GC content: 64.52
Gene sequence:
>1209_bases ATGACTGATCTTCGTCTTACCATGCGGTTCGCTGCAGTGCTCGCCACTGGCGCGCTCGTCGCCGGTTGCGGTACGTCGTC GCCCACGAAAGTGGACTACAAGAGCGATTCGAAATCGAAGGAAGCGTCGCTCGCAGTGCCGCCCAACATGCTTGACGAGA CGGCCGATCAGCGTTCGCTGCCGCCGCAGGGCGGCGCGACTTCCCTGTCTGCGCTTCAGCAGGTCCAGCACGCGGCACCC GCGCTGGACACCGTCGCGCCCGCCGTGTCCGGCATGCATATCCAGCGCGACGGCACCGAGAGCTGGCTCGTGATCGACGG CAAGAAGCCCGCCGACATCTGGCCGCAGGTTCGCCGCTTCTGGCAGGAGCAGGGCTTCCTGCTCGTCGTCGACCAGCGCG ACAAGGGCGTGATGGAAACCGACTGGAACGAGACCCATCCGCAGATCAACGACGGCCTGATCCGTAGCGTGATCACGAAG GCGATGGGCAACTCGTACGTGACGGCCGAGCGCAACAAGTACCGCACGCGCCTCGATTCGGCCCCGAACGGCGGCACTTA CGTGTTCATCAGCCAGAAGGGCATGCGCGAGGCGATCACCGGTGCGAACAACGATTCGAGCAAGTGGGAAGCGAAGCCGA ACGATCCGGCGCTCGAGACGGAATACCTGAAGCGGCTGATGGCAGTGCTCGCCCAGAACGAGCAGCGCGCGAAGAACGGC GAGCCGCCGATCGCGAACATCAACGACAACACGGTGCCGAAGGACAAGAAGGCGGACACCGACGCATCGAAGGCAGCCGC CGCGGCGATCGCCGCGCAGAACGTCGCGCGTACGTCGTCGCAAGCGAACGACGTCGACTCGGCTGCGGTGCCGTCCGAAG TCACGCTCGGCGAGCCGTACGACCGTTCGTGGCTGCACGTCGGCCTCGCGCTCGATCGCGCGAACTTCACGGTCGACGAT CGCGATCGCACGAAGGGCCTGTATTTCGTGCGTTATGTCGATCCGAAGGACATCAGCGCGGCCGAGCAGGGCTTCTGGAG CCAGCTGTTCCACGGCAAGAAGGAAAAGCAGGCAAAGCAGTATCGCGTCAACGTGAAGGCGCTGTCGTCCGACCAGACGC GCGTCGCAGTCGTCGACGATTCGGGTGCGATCGATACGTCGACGCCCGCCCGGCAAATCATGGGGCTGCTCGTGAATCAG CTGCGCTGA
Upstream 100 bases:
>100_bases CTTGGCCGTCGCTTTTTTGCACATCCCGGCGCGGCCCCGGTAAAATGCAAGGTTGATCCACGGAAAGCGCCGTGATTTAG CGGAAGAGGATTCCCCGAAC
Downstream 100 bases:
>100_bases TCGCGGCACGATCCCGGCCTTCGAAAAAGCCCGCCTTCCGGCGGGCTTTTTTCATTGTCGCGCGCGTTGGCGCCGGCGTG TGCGGGATGTTCGGTCTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQHAAP ALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITK AMGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPYDRSWLHVGLALDRANFTVDD RDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQYRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQ LR
Sequences:
>Translated_402_residues MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQHAAP ALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITK AMGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPYDRSWLHVGLALDRANFTVDD RDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQYRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQ LR >Mature_401_residues TDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQHAAPA LDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITKA MGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNGE PPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPYDRSWLHVGLALDRANFTVDDR DRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQYRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQL R
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43886; Mature: 43754
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSL CCCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEECCCCHHHHHHHHHCCC PPQGGATSLSALQQVQHAAPALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRF CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITKAMGNSYVTAERNKYRTRLDS HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCC APNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG CCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCC EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPY CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC DRSWLHVGLALDRANFTVDDRDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQ CCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH YRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQLR HEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure TDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSL CCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEECCCCHHHHHHHHHCCC PPQGGATSLSALQQVQHAAPALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRF CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITKAMGNSYVTAERNKYRTRLDS HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCC APNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG CCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCC EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPY CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC DRSWLHVGLALDRANFTVDDRDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQ CCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH YRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQLR HEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]