Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351422

Identifier: 115351422

GI number: 115351422

Start: 1504955

End: 1506163

Strand: Direct

Name: 115351422

Synonym: Bamb_1369

Alternate gene names: NA

Gene position: 1504955-1506163 (Clockwise)

Preceding gene: 115351421

Following gene: 115351426

Centisome position: 42.32

GC content: 64.52

Gene sequence:

>1209_bases
ATGACTGATCTTCGTCTTACCATGCGGTTCGCTGCAGTGCTCGCCACTGGCGCGCTCGTCGCCGGTTGCGGTACGTCGTC
GCCCACGAAAGTGGACTACAAGAGCGATTCGAAATCGAAGGAAGCGTCGCTCGCAGTGCCGCCCAACATGCTTGACGAGA
CGGCCGATCAGCGTTCGCTGCCGCCGCAGGGCGGCGCGACTTCCCTGTCTGCGCTTCAGCAGGTCCAGCACGCGGCACCC
GCGCTGGACACCGTCGCGCCCGCCGTGTCCGGCATGCATATCCAGCGCGACGGCACCGAGAGCTGGCTCGTGATCGACGG
CAAGAAGCCCGCCGACATCTGGCCGCAGGTTCGCCGCTTCTGGCAGGAGCAGGGCTTCCTGCTCGTCGTCGACCAGCGCG
ACAAGGGCGTGATGGAAACCGACTGGAACGAGACCCATCCGCAGATCAACGACGGCCTGATCCGTAGCGTGATCACGAAG
GCGATGGGCAACTCGTACGTGACGGCCGAGCGCAACAAGTACCGCACGCGCCTCGATTCGGCCCCGAACGGCGGCACTTA
CGTGTTCATCAGCCAGAAGGGCATGCGCGAGGCGATCACCGGTGCGAACAACGATTCGAGCAAGTGGGAAGCGAAGCCGA
ACGATCCGGCGCTCGAGACGGAATACCTGAAGCGGCTGATGGCAGTGCTCGCCCAGAACGAGCAGCGCGCGAAGAACGGC
GAGCCGCCGATCGCGAACATCAACGACAACACGGTGCCGAAGGACAAGAAGGCGGACACCGACGCATCGAAGGCAGCCGC
CGCGGCGATCGCCGCGCAGAACGTCGCGCGTACGTCGTCGCAAGCGAACGACGTCGACTCGGCTGCGGTGCCGTCCGAAG
TCACGCTCGGCGAGCCGTACGACCGTTCGTGGCTGCACGTCGGCCTCGCGCTCGATCGCGCGAACTTCACGGTCGACGAT
CGCGATCGCACGAAGGGCCTGTATTTCGTGCGTTATGTCGATCCGAAGGACATCAGCGCGGCCGAGCAGGGCTTCTGGAG
CCAGCTGTTCCACGGCAAGAAGGAAAAGCAGGCAAAGCAGTATCGCGTCAACGTGAAGGCGCTGTCGTCCGACCAGACGC
GCGTCGCAGTCGTCGACGATTCGGGTGCGATCGATACGTCGACGCCCGCCCGGCAAATCATGGGGCTGCTCGTGAATCAG
CTGCGCTGA

Upstream 100 bases:

>100_bases
CTTGGCCGTCGCTTTTTTGCACATCCCGGCGCGGCCCCGGTAAAATGCAAGGTTGATCCACGGAAAGCGCCGTGATTTAG
CGGAAGAGGATTCCCCGAAC

Downstream 100 bases:

>100_bases
TCGCGGCACGATCCCGGCCTTCGAAAAAGCCCGCCTTCCGGCGGGCTTTTTTCATTGTCGCGCGCGTTGGCGCCGGCGTG
TGCGGGATGTTCGGTCTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQHAAP
ALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITK
AMGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG
EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPYDRSWLHVGLALDRANFTVDD
RDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQYRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQ
LR

Sequences:

>Translated_402_residues
MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQHAAP
ALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITK
AMGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG
EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPYDRSWLHVGLALDRANFTVDD
RDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQYRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQ
LR
>Mature_401_residues
TDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQHAAPA
LDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITKA
MGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNGE
PPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPYDRSWLHVGLALDRANFTVDDR
DRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQYRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQL
R

Specific function: Unknown

COG id: COG3317

COG function: function code M; Uncharacterized lipoprotein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43886; Mature: 43754

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSL
CCCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEECCCCHHHHHHHHHCCC
PPQGGATSLSALQQVQHAAPALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRF
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHHHH
WQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITKAMGNSYVTAERNKYRTRLDS
HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCC
APNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG
CCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCC
EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPY
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC
DRSWLHVGLALDRANFTVDDRDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQ
CCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH
YRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQLR
HEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSL
CCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEECCCCHHHHHHHHHCCC
PPQGGATSLSALQQVQHAAPALDTVAPAVSGMHIQRDGTESWLVIDGKKPADIWPQVRRF
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHHHH
WQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVITKAMGNSYVTAERNKYRTRLDS
HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCC
APNGGTYVFISQKGMREAITGANNDSSKWEAKPNDPALETEYLKRLMAVLAQNEQRAKNG
CCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCC
EPPIANINDNTVPKDKKADTDASKAAAAAIAAQNVARTSSQANDVDSAAVPSEVTLGEPY
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC
DRSWLHVGLALDRANFTVDDRDRTKGLYFVRYVDPKDISAAEQGFWSQLFHGKKEKQAKQ
CCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH
YRVNVKALSSDQTRVAVVDDSGAIDTSTPARQIMGLLVNQLR
HEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]