| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351409
Identifier: 115351409
GI number: 115351409
Start: 1489096
End: 1489989
Strand: Direct
Name: 115351409
Synonym: Bamb_1356
Alternate gene names: NA
Gene position: 1489096-1489989 (Clockwise)
Preceding gene: 115351408
Following gene: 115351410
Centisome position: 41.87
GC content: 69.46
Gene sequence:
>894_bases ATGCCGATCACCTCAGCGAATCCCCCGGTTCCCCGTCAGCGACGCGTGCAGTGTGCAAGCGCCGCCGGCCTTCACCACGT CGCCTATACCGAATGGGGCGACCCGGCCAATCCGCGCGTGCTGGTCTGCGTGCATGGCCTGACCCGTTCGGGGCGCGACT TCGACCGGCTCGCCGCCGCGCTGTCCGATACATATCGCGTCGTCTGCCCCGACGTCGTCGGGCGCGGTCGCTCCGACTGG CTCGCCGATCCGCGGCATTACGCGATTCCGCAATACGTCGCCGACATGGTCACGCTGATCGCGCGGCTCGACGTCGAGTC GGTCGACTGGTTCGGCACGTCGATGGGCGGGCTGATCGGCATGGCGCTCGTGGGGTTGCCCGGTTCGCCGCTGCGCCGGA TGATCGTCAACGACGTCGGCCCGCGCATCGAACCCGATTCGCTGACGCGCATCGGCGAATACCTCGGCGTGCAGCCGCGC TTCGCGACCGAGCAGGAAGGCGTCGACTATCTGACGTCGCTATCGTTGCCGTTCGGGGAGTTGACCGCCGACGAATGGCG CGAGATCAACCGGCCGCTGCTGCGCGAGCTGCCCGACGGCGGCTGGACGATGCGCTACGATCCGCGCATCGCCGAGCCGT TCAAGGCGACGACGCCCGAGCTGGCCGCGCTCGGTGAGGCCACCCTGTGGCGCGCGATCGAGACGACCGATGCGTCGCTG CTCGTCGTGCGCGGCGCCGAGTCGGACCTGTTGTCGCGCGAGACCGCCGCCGAGATGGTGCGCCGCGGCCGACATGTGAC GCAGGCGGAAATTCCCGGCACGGGGCACGCGCCGGCATTCCTGAACGCCGACCAGATTGCGCTCGCGCGGCGGTTTTTCG TCGAAGGCGCCTGA
Upstream 100 bases:
>100_bases GTGCGTGACGACCTGCGTTGACGAAGCGGTTTACAATCGTTTGCATCGGGCGGCGCACGCGTTGCCCGCCGCGCCGCCTC TGTTCGACAGGATCCCAACG
Downstream 100 bases:
>100_bases TAAACGCGTCATAATATGCGGTTCGGCGCCGCACCGTCGCCGATTCTTCACCACTCAAACGACCGGAACATTCCATGGCA GTCATTCGTCACCACGTCGG
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Hydrolase; Alpha/Beta Fold Family Hydrolase; Hydrolase Or Acyltransferase; Hydrolase Protein; 2-Hydroxy-6-Oxo-6-Phenylhexa-2 4-Dienoate Hydrolase; Alpha/Beta Hydrolase Fold Family Protein; Esterase/Lipase/Thioesterase Family Protein; Hydrolase/Acyltransferase; D-(-)-3-Hydroxybutyrate Oligomer Hydrolase; Cation Diffusion Facilitator Family Transporter; Hydrolases Or Acyltransferases; Hydroxybutyrate-Dimer Hydrolase Protein; Alpha/Beta Hydrolase Fold Family; Alpha/Beta Hydrolase Superfamily Protein; Hydrolase / Acyltransferase; Hydrolase Alpha/Beta Fold Family Protein; Alpha/Beta Hydrolase Fold-Containing Protein
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MPITSANPPVPRQRRVQCASAAGLHHVAYTEWGDPANPRVLVCVHGLTRSGRDFDRLAAALSDTYRVVCPDVVGRGRSDW LADPRHYAIPQYVADMVTLIARLDVESVDWFGTSMGGLIGMALVGLPGSPLRRMIVNDVGPRIEPDSLTRIGEYLGVQPR FATEQEGVDYLTSLSLPFGELTADEWREINRPLLRELPDGGWTMRYDPRIAEPFKATTPELAALGEATLWRAIETTDASL LVVRGAESDLLSRETAAEMVRRGRHVTQAEIPGTGHAPAFLNADQIALARRFFVEGA
Sequences:
>Translated_297_residues MPITSANPPVPRQRRVQCASAAGLHHVAYTEWGDPANPRVLVCVHGLTRSGRDFDRLAAALSDTYRVVCPDVVGRGRSDW LADPRHYAIPQYVADMVTLIARLDVESVDWFGTSMGGLIGMALVGLPGSPLRRMIVNDVGPRIEPDSLTRIGEYLGVQPR FATEQEGVDYLTSLSLPFGELTADEWREINRPLLRELPDGGWTMRYDPRIAEPFKATTPELAALGEATLWRAIETTDASL LVVRGAESDLLSRETAAEMVRRGRHVTQAEIPGTGHAPAFLNADQIALARRFFVEGA >Mature_296_residues PITSANPPVPRQRRVQCASAAGLHHVAYTEWGDPANPRVLVCVHGLTRSGRDFDRLAAALSDTYRVVCPDVVGRGRSDWL ADPRHYAIPQYVADMVTLIARLDVESVDWFGTSMGGLIGMALVGLPGSPLRRMIVNDVGPRIEPDSLTRIGEYLGVQPRF ATEQEGVDYLTSLSLPFGELTADEWREINRPLLRELPDGGWTMRYDPRIAEPFKATTPELAALGEATLWRAIETTDASLL VVRGAESDLLSRETAAEMVRRGRHVTQAEIPGTGHAPAFLNADQIALARRFFVEGA
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32607; Mature: 32476
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPITSANPPVPRQRRVQCASAAGLHHVAYTEWGDPANPRVLVCVHGLTRSGRDFDRLAAA CCCCCCCCCCCHHHHHHHHHHCCCHHEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHH LSDTYRVVCPDVVGRGRSDWLADPRHYAIPQYVADMVTLIARLDVESVDWFGTSMGGLIG HHHCCEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MALVGLPGSPLRRMIVNDVGPRIEPDSLTRIGEYLGVQPRFATEQEGVDYLTSLSLPFGE HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHH LTADEWREINRPLLRELPDGGWTMRYDPRIAEPFKATTPELAALGEATLWRAIETTDASL CCHHHHHHHCHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHCHHHHHHHHHCCCCEE LVVRGAESDLLSRETAAEMVRRGRHVTQAEIPGTGHAPAFLNADQIALARRFFVEGA EEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure PITSANPPVPRQRRVQCASAAGLHHVAYTEWGDPANPRVLVCVHGLTRSGRDFDRLAAA CCCCCCCCCCHHHHHHHHHHCCCHHEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHH LSDTYRVVCPDVVGRGRSDWLADPRHYAIPQYVADMVTLIARLDVESVDWFGTSMGGLIG HHHCCEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MALVGLPGSPLRRMIVNDVGPRIEPDSLTRIGEYLGVQPRFATEQEGVDYLTSLSLPFGE HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHH LTADEWREINRPLLRELPDGGWTMRYDPRIAEPFKATTPELAALGEATLWRAIETTDASL CCHHHHHHHCHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHCHHHHHHHHHCCCCEE LVVRGAESDLLSRETAAEMVRRGRHVTQAEIPGTGHAPAFLNADQIALARRFFVEGA EEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA