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The map label for this gene is yoaB [C]

Identifier: 115351410

GI number: 115351410

Start: 1490064

End: 1490417

Strand: Direct

Name: yoaB [C]

Synonym: Bamb_1357

Alternate gene names: 115351410

Gene position: 1490064-1490417 (Clockwise)

Preceding gene: 115351409

Following gene: 115351411

Centisome position: 41.9

GC content: 65.54

Gene sequence:

>354_bases
ATGGCAGTCATTCGTCACCACGTCGGAGCCCGCCTCTCCGAAACCGCGATCCACAACGGTACCGTGTATCTGGCTGGCCA
GATCGCCGAAGACACCACCCAGGACATCAAGGGCCAGACGCGCGAAGTGCTGGGCCACATCGACCGCCTGCTCGCCGAAG
CGAACAGCGACAAGGCGCATCTGCTGTCGGTGCAGATCTACATTTCGGATCTCGCGAACTTCGAAGGCATGAACGCGGAG
TGGGACGCGTGGGTCGCGCCGGGCAACACGCCGCCGCGCGCGACCGTCGAGGCGAAGCTCGCGGATCCAGCGCTGCTGGT
CGAGATCGTCGTCGTCGCCGCGCAGCGGAGCTGA

Upstream 100 bases:

>100_bases
GGCGGTTTTTCGTCGAAGGCGCCTGATAAACGCGTCATAATATGCGGTTCGGCGCCGCACCGTCGCCGATTCTTCACCAC
TCAAACGACCGGAACATTCC

Downstream 100 bases:

>100_bases
GCGAAGCATCACGATGACCGCAATACGCCAGGCCGTGCGATGACCGAGTCCGTTACCGCTTCTTCCGTCGCGGCGCCGTC
GTTCGACGACGTGCTCGCGT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MAVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAHLLSVQIYISDLANFEGMNAE
WDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS

Sequences:

>Translated_117_residues
MAVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAHLLSVQIYISDLANFEGMNAE
WDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS
>Mature_116_residues
AVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAHLLSVQIYISDLANFEGMNAEW
DAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=40.3508771929825, Blast_Score=89, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12634; Mature: 12503

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAH
CCEEHHHHCCCHHHHEECCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSVQIYISDLANFEGMNAEWDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS
EEEEEEEEEHHCCCCCCCCCCCEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAH
CEEHHHHCCCHHHHEECCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSVQIYISDLANFEGMNAEWDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS
EEEEEEEEEHHCCCCCCCCCCCEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA