BacMap

Definition	Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession	NC_008390
Length	3,556,545

Click here to switch to the map view.

The map label for this gene is yjjL [H]

Identifier: 115351397

GI number: 115351397

Start: 1477751

End: 1479070

Strand: Direct

Name: yjjL [H]

Synonym: Bamb_1344

Alternate gene names: 115351397

Gene position: 1477751-1479070 (Clockwise)

Preceding gene: 115351396

Following gene: 115351398

Centisome position: 41.55

GC content: 68.41

Gene sequence:

>1320_bases
ATGAACGAGAATCATGCAGTTCCGACGGCGCCCCCACGCATCCGGCGCGGACAACGTATCGCGCTCGCGCTGCTGATGGT
GAGCGGGATCGTCAACTATCTCGACCGCGGCACGCTGGCCGTCGCGAGTTCGGCCATCCGGAACGATCTGGGTCTGTCGC
TCTCCGAAATGGGCTTGCTGCTGTCGGCATTTTCGTGGAGCTATGCGTTATGCCAGTTCCCGGTCGGCGGACTCGTCGAT
CGCATCGGGCCGCGCCGTTTGCTGGGCGTCGGGCTGATCGTCTGGTCGCTCGCGCAGGCGTCGGGCGGCATCGTCTCCAC
CTTCGGCTGGTTCATCGTCGCGCGTATCGTGCTCGGCATCGGCGAGGCGCCGCAGTTCCCGTCGGCGGCGCGGGTCGTGA
GCAACTGGTTTCCGCTGCGCGCGCGCGGGACGCCGACCGGCATCTTCAACGCGGCATCGCCGCTCGGCACCGCGCTCGCG
CCGTTGCTGCTGGCGGTGCTCGTCGCGTCGTTCAACTGGCGCTGGGCGTTCGTCGCGACCGGGGCGCTCGGCCTCGTCGT
CGCCGTCGTCTGGTTCGCCCTGTACCGCGATCCGGCGCGTGCGCAACTGACGGCAGCCGAACGTGCGTATCTCGACGCCG
ATGCGCAGACCGCCGTCGCGATGCCGAAGCTGACCTTCGCCGACTGGCGCAGCCTGTTCTCGCACGGCACGACCTGGGGC
ATGCTGATCGGATTCTTCGGTTCCGTGTATCTGAACTGGGTCTACCTGACCTGGTTGCCGGGGTACCTGACGATGGAGCG
TCACATGAGCCTCATTCGCACCGGGTTCGCGGCGTCGGTGCCGTTCCTGTGCGGATTCGTCGGCTCGCTGGTCGCCGGCT
GGCTGTCGGATGTGGTCACGCGCCGCAGCCGCTCGCCGGTCGTGAGCCGGCGCAACGCGGTGGTCGTCGCGATGCTCGGG
ATGGTCGCATTCACGATTCCGGCCGCGCTCGTGCAGAGCAACACGGTCGCGCTCGCGTGCATTTCGGTGGTGATCTTTCT
CGCCAATGCGGCATCGGCGTGTTCGTGGGCGCTCGCGACGGCGGCCGCGCCGCCGAGCCGCATCGCATCGCTCGGCGCGA
TCCAGAATTTCGGCGGTTTCATCGGCGGGGCGCTCGCGCCTATCCTGACGGGTGTGATCGCGCAGAAGTGGTCGTTCGTG
CCCGCGCTGCTGACGGCGGCGGCAATCGCATTCGCCGGTGCGATGGCCTACCTGCTGCTGGTTCGCAAGCCGATTCCCGA
GCAGGCCGCGAGCACCGCGTCCGGCGCGCTGCCCGCCTGA

Upstream 100 bases:

>100_bases
TCCGACACGCGAAGAAGTGGAGCGTGCGGCCGTATAGATTCCGCGACGACGGAACGGGCAGCAGCCCGGCCAACCATTCA
GGACAATGGAGACAGACGCA

Downstream 100 bases:

>100_bases
GCGCCGCGCCTCCATCACGCATTCAAGAAAGCAAGGAAAGGAGAAACAGATGCAACACCATCAGCAGTCGAGCGCGACCA
TCGAGGGGATCGTACCGGTG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLLLSAFSWSYALCQFPVGGLVD
RIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALA
PLLLAVLVASFNWRWAFVATGALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG
MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVTRRSRSPVVSRRNAVVVAMLG
MVAFTIPAALVQSNTVALACISVVIFLANAASACSWALATAAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFV
PALLTAAAIAFAGAMAYLLLVRKPIPEQAASTASGALPA

Sequences:

>Translated_439_residues
MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLLLSAFSWSYALCQFPVGGLVD
RIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALA
PLLLAVLVASFNWRWAFVATGALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG
MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVTRRSRSPVVSRRNAVVVAMLG
MVAFTIPAALVQSNTVALACISVVIFLANAASACSWALATAAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFV
PALLTAAAIAFAGAMAYLLLVRKPIPEQAASTASGALPA
>Mature_439_residues
MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLLLSAFSWSYALCQFPVGGLVD
RIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALA
PLLLAVLVASFNWRWAFVATGALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG
MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVTRRSRSPVVSRRNAVVVAMLG
MVAFTIPAALVQSNTVALACISVVIFLANAASACSWALATAAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFV
PALLTAAAIAFAGAMAYLLLVRKPIPEQAASTASGALPA

Specific function: Responsible for the transport of L-galactonate from the periplasm across the inner membrane (Probable). Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI6912666, Length=392, Percent_Identity=22.7040816326531, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI154800443, Length=443, Percent_Identity=23.9277652370203, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI9966811, Length=428, Percent_Identity=22.6635514018692, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI148743791, Length=266, Percent_Identity=22.5563909774436, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI5031955, Length=318, Percent_Identity=21.6981132075472, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI256219598, Length=395, Percent_Identity=24.3037974683544, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI4503847, Length=395, Percent_Identity=24.3037974683544, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI256219483, Length=395, Percent_Identity=24.3037974683544, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI9945322, Length=442, Percent_Identity=23.5294117647059, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4885441, Length=392, Percent_Identity=23.7244897959184, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI154350196, Length=286, Percent_Identity=23.7762237762238, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI256219543, Length=417, Percent_Identity=22.3021582733813, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI185136021, Length=183, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI21322234, Length=375, Percent_Identity=22.1333333333333, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI2367379, Length=416, Percent_Identity=42.7884615384615, Blast_Score=344, Evalue=6e-96,
Organism=Escherichia coli, GI87082320, Length=424, Percent_Identity=32.5471698113208, Blast_Score=256, Evalue=2e-69,
Organism=Escherichia coli, GI1789515, Length=426, Percent_Identity=31.6901408450704, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1789152, Length=439, Percent_Identity=31.2072892938497, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI2367193, Length=432, Percent_Identity=23.6111111111111, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788573, Length=364, Percent_Identity=26.6483516483516, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082071, Length=396, Percent_Identity=25.5050505050505, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082310, Length=312, Percent_Identity=23.3974358974359, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25141316, Length=339, Percent_Identity=23.3038348082596, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI25141318, Length=336, Percent_Identity=23.5119047619048, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25141341, Length=357, Percent_Identity=23.5294117647059, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17535049, Length=436, Percent_Identity=24.5412844036697, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI86561091, Length=290, Percent_Identity=23.7931034482759, Blast_Score=82, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17560030, Length=367, Percent_Identity=23.433242506812, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193205400, Length=274, Percent_Identity=25.1824817518248, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17554148, Length=289, Percent_Identity=26.2975778546713, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115533556, Length=408, Percent_Identity=24.0196078431373, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115533554, Length=426, Percent_Identity=23.4741784037559, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI32565916, Length=256, Percent_Identity=22.65625, Blast_Score=72, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI32565914, Length=262, Percent_Identity=22.9007633587786, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71997452, Length=386, Percent_Identity=21.7616580310881, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17557872, Length=260, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563054, Length=270, Percent_Identity=24.0740740740741, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562692, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17554962, Length=306, Percent_Identity=21.5686274509804, Blast_Score=65, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24583789, Length=368, Percent_Identity=24.4565217391304, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI17864456, Length=405, Percent_Identity=27.1604938271605, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24654039, Length=405, Percent_Identity=27.1604938271605, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24654041, Length=197, Percent_Identity=32.994923857868, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24654037, Length=197, Percent_Identity=32.994923857868, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24654044, Length=197, Percent_Identity=32.994923857868, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639764, Length=427, Percent_Identity=23.8875878220141, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24584153, Length=357, Percent_Identity=22.96918767507, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648416, Length=475, Percent_Identity=23.3684210526316, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21356189, Length=475, Percent_Identity=23.3684210526316, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28573299, Length=397, Percent_Identity=23.6775818639798, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI20130167, Length=409, Percent_Identity=23.2273838630807, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28573708, Length=410, Percent_Identity=22.1951219512195, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI28573707, Length=410, Percent_Identity=22.1951219512195, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24656866, Length=437, Percent_Identity=24.9427917620137, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45550478, Length=437, Percent_Identity=24.9427917620137, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24656861, Length=437, Percent_Identity=24.9427917620137, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24658658, Length=458, Percent_Identity=23.3624454148472, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24655271, Length=434, Percent_Identity=23.7327188940092, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24580790, Length=267, Percent_Identity=22.4719101123595, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI20130135, Length=434, Percent_Identity=23.7327188940092, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641682, Length=408, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920686, Length=420, Percent_Identity=24.5238095238095, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI45550364, Length=445, Percent_Identity=25.3932584269663, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI45550460, Length=448, Percent_Identity=24.5535714285714, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24654215, Length=352, Percent_Identity=23.5795454545455, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19922400, Length=351, Percent_Identity=23.6467236467236, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24655255, Length=409, Percent_Identity=23.7163814180929, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 46234; Mature: 46234

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLL
CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
LSAFSWSYALCQFPVGGLVDRIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGI
HHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALAPLLLAVLVASFNWRWAFVAT
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
GALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCHHH
MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSRSPVVSRRNAVVVAMLGMVAFTIPAALVQSNTVALACISVVIFLANAASACSWALAT
HCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFVPALLTAAAIAFAGAMAYLLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKPIPEQAASTASGALPA
HHCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MNENHAVPTAPPRIRRGQRIALALLMVSGIVNYLDRGTLAVASSAIRNDLGLSLSEMGLL
CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
LSAFSWSYALCQFPVGGLVDRIGPRRLLGVGLIVWSLAQASGGIVSTFGWFIVARIVLGI
HHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GEAPQFPSAARVVSNWFPLRARGTPTGIFNAASPLGTALAPLLLAVLVASFNWRWAFVAT
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
GALGLVVAVVWFALYRDPARAQLTAAERAYLDADAQTAVAMPKLTFADWRSLFSHGTTWG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCHHH
MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSLVAGWLSDVVT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSRSPVVSRRNAVVVAMLGMVAFTIPAALVQSNTVALACISVVIFLANAASACSWALAT
HCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAPPSRIASLGAIQNFGGFIGGALAPILTGVIAQKWSFVPALLTAAAIAFAGAMAYLLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKPIPEQAASTASGALPA
HHCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]