| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351203
Identifier: 115351203
GI number: 115351203
Start: 1259780
End: 1260487
Strand: Direct
Name: 115351203
Synonym: Bamb_1150
Alternate gene names: NA
Gene position: 1259780-1260487 (Clockwise)
Preceding gene: 115351202
Following gene: 115351204
Centisome position: 35.42
GC content: 70.62
Gene sequence:
>708_bases ATGACGCTCGATGAAGTCCTGACCTCGCTGTTTCCCAAAGGCCATTCGATTACGCGCAGCGGCGGCCTGCTGACGGGCCA CGCGCTGCTGACCGGCACGCGCGTCGACGTGATTGGCGTTTCCGAGCGCTTGCCGTTCGGCATCGACGAAGCGCTGACGC TCGCGTCGCACGTGCTCGACACGATCGAGCGCGGCGGCGACACGCCGATTCTCGTGCTCGTCGACAGCGACAGCCAGCGG ATGAGCAAGCGCGACGAACTGCTCGGCCTGAACGAAGGGCTGTCGCATCTCGCGAAATGCCTGATGCAGGCGGAGCTCGC CGGGCACCGCACGATCGGCGTGCTGTACGGCCATACGGCCGCGGGTGCGTTCATCGCGACCGCGCTCGCGACGCGTACGC TGCTCGCGGTGCCGGGCGCCGAGCCGGAGGTGATGGACCTGCCGTCGATGTCGCGCGTGACGAAGCTGCCGATCGACGTG CTGAAGGAGATGGCGCGCGCGACGCCGGTGTTCGCGCCGGGGCTCGACAATCTCGTGAAGATGGGCGCCGTCGACGCCGT GCTCGATCCGGGCCGCGCGCTCGACGCGCAGGTCGGTGAATGGCTCGGCAGGCCGGCCGATCGCGGCGACGGTCGTGCGG CGCGCGGCCGGCCGGTCGCGGCCGACGTCGCGCGACGCGTCGAGGCACTCGCGCGTGCCGCACGCTGA
Upstream 100 bases:
>100_bases GATGTGTGGCGCGCGCTCGGCGCGGACACGCCGGAAGCGATCCCCGGGATGCCCGACGACGAATTCGCGAAGCTCGCCGA CCAACTGCAGGAGCCGCAGC
Downstream 100 bases:
>100_bases CACACCGCTGCGCCGCCACACGCTCGTCACGCTGACGGCGGCCGGGTGGCGCGCGGCATGCGCGCGCGATCCCGCGCTGG CCGCAGATCCGCTCGTGCAG
Product: malonate decarboxylase subunit gamma
Products: NA
Alternate protein names: Malonate Decarboxylase Subunit Gamma; Malonate Decarboxylase Subunit MdcE; Malonate Decarboxylase Gamma-Subunit; Malonate Decarboxylase Gamma-Subunit MdcE
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MTLDEVLTSLFPKGHSITRSGGLLTGHALLTGTRVDVIGVSERLPFGIDEALTLASHVLDTIERGGDTPILVLVDSDSQR MSKRDELLGLNEGLSHLAKCLMQAELAGHRTIGVLYGHTAAGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDV LKEMARATPVFAPGLDNLVKMGAVDAVLDPGRALDAQVGEWLGRPADRGDGRAARGRPVAADVARRVEALARAAR
Sequences:
>Translated_235_residues MTLDEVLTSLFPKGHSITRSGGLLTGHALLTGTRVDVIGVSERLPFGIDEALTLASHVLDTIERGGDTPILVLVDSDSQR MSKRDELLGLNEGLSHLAKCLMQAELAGHRTIGVLYGHTAAGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDV LKEMARATPVFAPGLDNLVKMGAVDAVLDPGRALDAQVGEWLGRPADRGDGRAARGRPVAADVARRVEALARAAR >Mature_234_residues TLDEVLTSLFPKGHSITRSGGLLTGHALLTGTRVDVIGVSERLPFGIDEALTLASHVLDTIERGGDTPILVLVDSDSQRM SKRDELLGLNEGLSHLAKCLMQAELAGHRTIGVLYGHTAAGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDVL KEMARATPVFAPGLDNLVKMGAVDAVLDPGRALDAQVGEWLGRPADRGDGRAARGRPVAADVARRVEALARAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24748; Mature: 24617
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDEVLTSLFPKGHSITRSGGLLTGHALLTGTRVDVIGVSERLPFGIDEALTLASHVLD CCHHHHHHHHCCCCCCEECCCCEEECHHHEECCEEEEEECCCCCCCCHHHHHHHHHHHHH TIERGGDTPILVLVDSDSQRMSKRDELLGLNEGLSHLAKCLMQAELAGHRTIGVLYGHTA HHHCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH AGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDVLKEMARATPVFAPGLDNLVK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHH MGAVDAVLDPGRALDAQVGEWLGRPADRGDGRAARGRPVAADVARRVEALARAAR HCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLDEVLTSLFPKGHSITRSGGLLTGHALLTGTRVDVIGVSERLPFGIDEALTLASHVLD CHHHHHHHHCCCCCCEECCCCEEECHHHEECCEEEEEECCCCCCCCHHHHHHHHHHHHH TIERGGDTPILVLVDSDSQRMSKRDELLGLNEGLSHLAKCLMQAELAGHRTIGVLYGHTA HHHCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH AGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDVLKEMARATPVFAPGLDNLVK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHH MGAVDAVLDPGRALDAQVGEWLGRPADRGDGRAARGRPVAADVARRVEALARAAR HCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA